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dbVar

Database of genomic structural variation

nsv881606

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:119,827

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 490 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):170,719,532-170,839,358

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv881606	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	170,719,532	170,723,733	170,829,908	170,839,358
nsv881606	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	171,640,683	171,644,884	171,751,059	171,760,509
nsv881606	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	171,877,258	171,881,459	171,987,634	171,997,084

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1528885	copy number loss	SP81387	SNP array	SNP genotyping analysis	11
nssv1550739	copy number loss	MS18588	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1528885	Remapped	Perfect	NC_000004.12:g.(17 0719532_170723733) _(170829908_170839 358)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	170,719,532	170,723,733	170,829,908	170,839,358
nssv1550739	Remapped	Perfect	NC_000004.12:g.(17 0719532_170723733) _(170829908_170839 358)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	170,719,532	170,723,733	170,829,908	170,839,358
nssv1528885	Remapped	Perfect	NC_000004.11:g.(17 1640683_171644884) _(171751059_171760 509)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	171,640,683	171,644,884	171,751,059	171,760,509
nssv1550739	Remapped	Perfect	NC_000004.11:g.(17 1640683_171644884) _(171751059_171760 509)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	171,640,683	171,644,884	171,751,059	171,760,509
nssv1528885	Submitted genomic		NC_000004.10:g.(17 1877258_171881459) _(171987634_171997 084)del	NCBI36 (hg18)		NC_000004.10	Chr4	171,877,258	171,881,459	171,987,634	171,997,084
nssv1550739	Submitted genomic		NC_000004.10:g.(17 1877258_171881459) _(171987634_171997 084)del	NCBI36 (hg18)		NC_000004.10	Chr4	171,877,258	171,881,459	171,987,634	171,997,084

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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