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dbVar

Database of genomic structural variation

nsv881690

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:91,043

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 524 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):23,325,323-23,416,365

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv881690	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	23,325,323	23,331,337	23,395,796	23,416,365
nsv881690	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	23,325,432	23,331,446	23,395,905	23,416,474
nsv881690	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	23,361,189	23,367,203	23,431,662	23,452,231

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1583521	copy number loss	IS36527	SNP array	SNP genotyping analysis	45
nssv1584562	copy number loss	IS37065	SNP array	SNP genotyping analysis	45

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1583521	Remapped	Perfect	NC_000005.10:g.(23 325323_23331337)_( 23395796_23416365) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	23,325,323	23,331,337	23,395,796	23,416,365
nssv1584562	Remapped	Perfect	NC_000005.10:g.(23 325323_23331337)_( 23395796_23416365) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	23,325,323	23,331,337	23,395,796	23,416,365
nssv1583521	Remapped	Perfect	NC_000005.9:g.(233 25432_23331446)_(2 3395905_23416474)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	23,325,432	23,331,446	23,395,905	23,416,474
nssv1584562	Remapped	Perfect	NC_000005.9:g.(233 25432_23331446)_(2 3395905_23416474)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	23,325,432	23,331,446	23,395,905	23,416,474
nssv1583521	Submitted genomic		NC_000005.8:g.(233 61189_23367203)_(2 3431662_23452231)d el	NCBI36 (hg18)		NC_000005.8	Chr5	23,361,189	23,367,203	23,431,662	23,452,231
nssv1584562	Submitted genomic		NC_000005.8:g.(233 61189_23367203)_(2 3431662_23452231)d el	NCBI36 (hg18)		NC_000005.8	Chr5	23,361,189	23,367,203	23,431,662	23,452,231

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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