nsv881774
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:158,627
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 625 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 625 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 331 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv881774 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 69,667,435 | 69,680,302 | 69,818,819 | 69,826,061 |
| nsv881774 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 68,963,262 | 68,976,129 | 69,114,646 | 69,121,888 |
| nsv881774 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 68,999,018 | 69,011,885 | 69,150,402 | 69,157,644 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1545469 | copy number loss | MS16801 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1545469 | Remapped | Perfect | NC_000005.10:g.(69 667435_69680302)_( 69818819_69826061) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 69,667,435 | 69,680,302 | 69,818,819 | 69,826,061 |
| nssv1545469 | Remapped | Perfect | NC_000005.9:g.(689 63262_68976129)_(6 9114646_69121888)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 68,963,262 | 68,976,129 | 69,114,646 | 69,121,888 |
| nssv1545469 | Submitted genomic | NC_000005.8:g.(689 99018_69011885)_(6 9150402_69157644)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 68,999,018 | 69,011,885 | 69,150,402 | 69,157,644 |