nsv881848
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:423,232
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1275 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 1275 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 625 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv881848 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 69,958,474 | 69,972,711 | 70,374,839 | 70,381,705 |
| nsv881848 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 69,254,301 | 69,268,538 | 69,670,666 | 69,677,532 |
| nsv881848 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 69,290,057 | 69,304,294 | 69,706,422 | 69,713,288 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557735 | copy number loss | MS22854 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557735 | Remapped | Perfect | NC_000005.10:g.(69 958474_69972711)_( 70374839_70381705) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 69,958,474 | 69,972,711 | 70,374,839 | 70,381,705 |
| nssv1557735 | Remapped | Perfect | NC_000005.9:g.(692 54301_69268538)_(6 9670666_69677532)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,254,301 | 69,268,538 | 69,670,666 | 69,677,532 |
| nssv1557735 | Submitted genomic | NC_000005.8:g.(692 90057_69304294)_(6 9706422_69713288)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,290,057 | 69,304,294 | 69,706,422 | 69,713,288 |