nsv881970
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:75,580
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 598 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 598 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 368 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv881970 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nsv881970 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nsv881970 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1527273 | copy number gain | SP58310 | SNP array | SNP genotyping analysis | 14 |
| nssv1534060 | copy number gain | MS11444 | SNP array | SNP genotyping analysis | 10 |
| nssv1540193 | copy number gain | MS14728 | SNP array | SNP genotyping analysis | 13 |
| nssv1542666 | copy number gain | MS15826 | SNP array | SNP genotyping analysis | 14 |
| nssv1546005 | copy number gain | MS17097 | SNP array | SNP genotyping analysis | 13 |
| nssv1546354 | copy number gain | MS17158 | SNP array | SNP genotyping analysis | 10 |
| nssv1547616 | copy number gain | MS17492 | SNP array | SNP genotyping analysis | 17 |
| nssv1550274 | copy number gain | MS18387 | SNP array | SNP genotyping analysis | 20 |
| nssv1551657 | copy number gain | MS18966 | SNP array | SNP genotyping analysis | 9 |
| nssv1552456 | copy number gain | MS19437 | SNP array | SNP genotyping analysis | 18 |
| nssv1554195 | copy number gain | MS20640 | SNP array | SNP genotyping analysis | 9 |
| nssv1561678 | copy number gain | MS25181 | SNP array | SNP genotyping analysis | 10 |
| nssv1566681 | copy number gain | IS30837 | SNP array | SNP genotyping analysis | 21 |
| nssv1579552 | copy number gain | IS35129 | SNP array | SNP genotyping analysis | 12 |
| nssv1596422 | copy number gain | IS40503 | SNP array | SNP genotyping analysis | 12 |
| nssv1599238 | copy number gain | IS41483 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1527273 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1534060 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1540193 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1542666 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1546005 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1546354 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1547616 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1550274 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1551657 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1552456 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1554195 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1561678 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1566681 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1579552 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1596422 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1599238 | Remapped | Perfect | NC_000005.10:g.(70 381705_70392523)_( 70441472_70457284) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,381,705 | 70,392,523 | 70,441,472 | 70,457,284 |
| nssv1527273 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1534060 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1540193 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1542666 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1546005 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1546354 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1547616 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1550274 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1551657 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1552456 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1554195 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1561678 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1566681 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1579552 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1596422 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1599238 | Remapped | Perfect | NC_000005.9:g.(696 77532_69688350)_(6 9737299_69753111)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,677,532 | 69,688,350 | 69,737,299 | 69,753,111 |
| nssv1527273 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1534060 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1540193 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1542666 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1546005 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1546354 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1547616 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1550274 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1551657 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1552456 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1554195 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1561678 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1566681 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1579552 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1596422 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 | ||
| nssv1599238 | Submitted genomic | NC_000005.8:g.(697 13288_69724106)_(6 9773055_69788867)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,713,288 | 69,724,106 | 69,773,055 | 69,788,867 |