nsv882001
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:372,268
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1240 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 1244 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 650 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882001 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,631,674 | 70,642,075 | 70,995,423 | 71,003,941 |
| nsv882001 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 69,927,501 | 69,937,902 | 70,291,250 | 70,299,768 |
| nsv882001 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 69,963,257 | 69,973,658 | 70,327,006 | 70,335,524 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557736 | copy number loss | MS22854 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557736 | Remapped | Perfect | NC_000005.10:g.(70 631674_70642075)_( 70995423_71003941) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,631,674 | 70,642,075 | 70,995,423 | 71,003,941 |
| nssv1557736 | Remapped | Perfect | NC_000005.9:g.(699 27501_69937902)_(7 0291250_70299768)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,927,501 | 69,937,902 | 70,291,250 | 70,299,768 |
| nssv1557736 | Submitted genomic | NC_000005.8:g.(699 63257_69973658)_(7 0327006_70335524)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 69,963,257 | 69,973,658 | 70,327,006 | 70,335,524 |