nsv882104
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:89,957
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 983 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 983 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 648 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882104 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,930,289 | 70,942,497 | 71,013,034 | 71,020,245 |
| nsv882104 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 70,226,116 | 70,238,324 | 70,308,861 | 70,316,072 |
| nsv882104 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 70,261,872 | 70,274,080 | 70,344,617 | 70,351,828 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1528889 | copy number gain | SP81387 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1528889 | Remapped | Perfect | NC_000005.10:g.(70 930289_70942497)_( 71013034_71020245) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,930,289 | 70,942,497 | 71,013,034 | 71,020,245 |
| nssv1528889 | Remapped | Perfect | NC_000005.9:g.(702 26116_70238324)_(7 0308861_70316072)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,226,116 | 70,238,324 | 70,308,861 | 70,316,072 |
| nssv1528889 | Submitted genomic | NC_000005.8:g.(702 61872_70274080)_(7 0344617_70351828)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,261,872 | 70,274,080 | 70,344,617 | 70,351,828 |