nsv882124
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:127,019
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1127 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 1127 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 704 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882124 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,975,678 | 70,978,050 | 71,083,639 | 71,102,696 |
| nsv882124 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 70,271,505 | 70,273,877 | 70,379,466 | 70,398,523 |
| nsv882124 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 70,307,261 | 70,309,633 | 70,415,222 | 70,434,279 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1499051 | copy number loss | SP50148 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1499051 | Remapped | Perfect | NC_000005.10:g.(70 975678_70978050)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,975,678 | 70,978,050 | 71,083,639 | 71,102,696 |
| nssv1499051 | Remapped | Perfect | NC_000005.9:g.(702 71505_70273877)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,271,505 | 70,273,877 | 70,379,466 | 70,398,523 |
| nssv1499051 | Submitted genomic | NC_000005.8:g.(703 07261_70309633)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,307,261 | 70,309,633 | 70,415,222 | 70,434,279 |