nsv882136
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:107,274
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1074 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 1074 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 671 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882136 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nsv882136 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nsv882136 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1538374 | copy number gain | MS13716 | SNP array | SNP genotyping analysis | 13 |
| nssv1557747 | copy number gain | MS22854 | SNP array | SNP genotyping analysis | 21 |
| nssv1560129 | copy number loss | MS24337 | SNP array | SNP genotyping analysis | 10 |
| nssv1560374 | copy number gain | MS24450 | SNP array | SNP genotyping analysis | 14 |
| nssv1562663 | copy number gain | MS25695 | SNP array | SNP genotyping analysis | 9 |
| nssv1566705 | copy number loss | IS30883 | SNP array | SNP genotyping analysis | 18 |
| nssv1566809 | copy number loss | IS30925 | SNP array | SNP genotyping analysis | 38 |
| nssv1567189 | copy number loss | IS31046 | SNP array | SNP genotyping analysis | 49 |
| nssv1569223 | copy number loss | IS31553 | SNP array | SNP genotyping analysis | 25 |
| nssv1571693 | copy number gain | IS32777 | SNP array | SNP genotyping analysis | 19 |
| nssv1576360 | copy number gain | IS34025 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1538374 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1557747 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1560129 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1560374 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1562663 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1566705 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1566809 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1567189 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1569223 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1571693 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1576360 | Remapped | Perfect | NC_000005.10:g.(70 995423_71003941)_( 71083639_71102696) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,995,423 | 71,003,941 | 71,083,639 | 71,102,696 |
| nssv1538374 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1557747 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1560129 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1560374 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1562663 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1566705 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1566809 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1567189 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1569223 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1571693 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1576360 | Remapped | Perfect | NC_000005.9:g.(702 91250_70299768)_(7 0379466_70398523)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 70,291,250 | 70,299,768 | 70,379,466 | 70,398,523 |
| nssv1538374 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1557747 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1560129 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1560374 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1562663 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1566705 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1566809 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1567189 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1569223 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1571693 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 | ||
| nssv1576360 | Submitted genomic | NC_000005.8:g.(703 27006_70335524)_(7 0415222_70434279)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 70,327,006 | 70,335,524 | 70,415,222 | 70,434,279 |