nsv882191
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,749
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 258 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 258 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 61 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882191 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 75,182,253 | 75,190,953 | 75,244,572 | 75,259,001 |
| nsv882191 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 74,478,078 | 74,486,778 | 74,540,397 | 74,554,826 |
| nsv882191 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 74,513,834 | 74,522,534 | 74,576,153 | 74,590,582 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557738 | copy number loss | MS22854 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557738 | Remapped | Perfect | NC_000005.10:g.(75 182253_75190953)_( 75244572_75259001) del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 75,182,253 | 75,190,953 | 75,244,572 | 75,259,001 |
| nssv1557738 | Remapped | Perfect | NC_000005.9:g.(744 78078_74486778)_(7 4540397_74554826)d el | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 74,478,078 | 74,486,778 | 74,540,397 | 74,554,826 |
| nssv1557738 | Submitted genomic | NC_000005.8:g.(745 13834_74522534)_(7 4576153_74590582)d el | NCBI36 (hg18) | NC_000005.8 | Chr5 | 74,513,834 | 74,522,534 | 74,576,153 | 74,590,582 |