nsv882577
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:216,168
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1300 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1300 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 376 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882577 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 105,103,057 | 105,116,954 | 105,314,304 | 105,319,224 |
| nsv882577 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 104,438,758 | 104,452,655 | 104,650,005 | 104,654,925 |
| nsv882577 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 104,466,657 | 104,480,554 | 104,677,904 | 104,682,824 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1551759 | copy number loss | MS18978 | SNP array | SNP genotyping analysis | 145 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1551759 | Remapped | Perfect | NC_000005.10:g.(10 5103057_105116954) _(105314304_105319 224)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,103,057 | 105,116,954 | 105,314,304 | 105,319,224 |
| nssv1551759 | Remapped | Perfect | NC_000005.9:g.(104 438758_104452655)_ (104650005_1046549 25)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,438,758 | 104,452,655 | 104,650,005 | 104,654,925 |
| nssv1551759 | Submitted genomic | NC_000005.8:g.(104 466657_104480554)_ (104677904_1046828 24)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,466,657 | 104,480,554 | 104,677,904 | 104,682,824 |