nsv882591
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:126,105
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1018 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1018 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 317 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv882591 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nsv882591 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nsv882591 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535565 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
| nssv1536525 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
| nssv1541425 | copy number loss | MS15312 | SNP array | SNP genotyping analysis | 67 |
| nssv1569326 | copy number loss | IS31563 | SNP array | SNP genotyping analysis | 64 |
| nssv1571240 | copy number gain | IS32653 | SNP array | SNP genotyping analysis | 20 |
| nssv1574064 | copy number loss | IS33507 | SNP array | SNP genotyping analysis | 41 |
| nssv1583570 | copy number loss | IS36533 | SNP array | SNP genotyping analysis | 40 |
| nssv1591698 | copy number loss | IS39011 | SNP array | SNP genotyping analysis | 162 |
| nssv1594132 | copy number loss | IS39716 | SNP array | SNP genotyping analysis | 40 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535565 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1536525 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1541425 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1569326 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1571240 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1574064 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1583570 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1591698 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1594132 | Remapped | Perfect | NC_000005.10:g.(10 5134685_105138325) _(105252151_105260 789)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,134,685 | 105,138,325 | 105,252,151 | 105,260,789 |
| nssv1535565 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1536525 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1541425 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1569326 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1571240 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)dup | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1574064 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1583570 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1591698 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1594132 | Remapped | Perfect | NC_000005.9:g.(104 470386_104474026)_ (104587852_1045964 90)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,470,386 | 104,474,026 | 104,587,852 | 104,596,490 |
| nssv1535565 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1536525 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1541425 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1569326 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1571240 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)dup | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1574064 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1583570 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1591698 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 | ||
| nssv1594132 | Submitted genomic | NC_000005.8:g.(104 498285_104501925)_ (104615751_1046243 89)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 104,498,285 | 104,501,925 | 104,615,751 | 104,624,389 |