nsv882731
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18,579
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 213 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 213 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 65 SVs from 15 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv882731 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nsv882731 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nsv882731 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1500829 | copy number loss | SP50921 | SNP array | SNP genotyping analysis | 20 |
nssv1503254 | copy number loss | SP52019 | SNP array | SNP genotyping analysis | 22 |
nssv1505293 | copy number loss | SP53349 | SNP array | SNP genotyping analysis | 19 |
nssv1505703 | copy number loss | SP53863 | SNP array | SNP genotyping analysis | 14 |
nssv1518134 | copy number loss | SP57469 | SNP array | SNP genotyping analysis | 98 |
nssv1519103 | copy number loss | SP80955 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1500829 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1503254 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1505293 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1505703 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1518134 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1519103 | Remapped | Perfect | NC_000005.10:g.(11 5366806_115371714) _(115383894_115385 384)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 115,366,806 | 115,371,714 | 115,383,894 | 115,385,384 |
nssv1500829 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1503254 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1505293 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1505703 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1518134 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1519103 | Remapped | Perfect | NC_000005.9:g.(114 702503_114707411)_ (114719591_1147210 81)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 114,702,503 | 114,707,411 | 114,719,591 | 114,721,081 |
nssv1500829 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 | ||
nssv1503254 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 | ||
nssv1505293 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 | ||
nssv1505703 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 | ||
nssv1518134 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 | ||
nssv1519103 | Submitted genomic | NC_000005.8:g.(114 730402_114735310)_ (114747490_1147489 80)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 114,730,402 | 114,735,310 | 114,747,490 | 114,748,980 |