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dbVar

Database of genomic structural variation

nsv882766

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:139,108

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 623 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):118,557,443-118,696,550

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv882766	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	118,557,443	118,559,207	118,685,011	118,696,550
nsv882766	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	117,893,138	117,894,902	118,020,706	118,032,245
nsv882766	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000005.8	Chr5	117,921,037	117,922,801	118,048,605	118,060,144

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1578154	copy number loss	IS34698	SNP array	SNP genotyping analysis	14
nssv1593997	copy number loss	IS39660	SNP array	SNP genotyping analysis	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1578154	Remapped	Perfect	NC_000005.10:g.(11 8557443_118559207) _(118685011_118696 550)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	118,557,443	118,559,207	118,685,011	118,696,550
nssv1593997	Remapped	Perfect	NC_000005.10:g.(11 8557443_118559207) _(118685011_118696 550)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	118,557,443	118,559,207	118,685,011	118,696,550
nssv1578154	Remapped	Perfect	NC_000005.9:g.(117 893138_117894902)_ (118020706_1180322 45)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	117,893,138	117,894,902	118,020,706	118,032,245
nssv1593997	Remapped	Perfect	NC_000005.9:g.(117 893138_117894902)_ (118020706_1180322 45)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	117,893,138	117,894,902	118,020,706	118,032,245
nssv1578154	Submitted genomic		NC_000005.8:g.(117 921037_117922801)_ (118048605_1180601 44)del	NCBI36 (hg18)		NC_000005.8	Chr5	117,921,037	117,922,801	118,048,605	118,060,144
nssv1593997	Submitted genomic		NC_000005.8:g.(117 921037_117922801)_ (118048605_1180601 44)del	NCBI36 (hg18)		NC_000005.8	Chr5	117,921,037	117,922,801	118,048,605	118,060,144

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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