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dbVar

Database of genomic structural variation

nsv883578

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:26,754

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1678 SVs from 102 studies. See in: genome view

Remapped(Score: Perfect):29,881,910-29,908,663

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv883578	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	29,881,910	29,883,666	29,907,748	29,908,663
nsv883578	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	29,849,687	29,851,443	29,875,525	29,876,440
nsv883578	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	29,957,666	29,959,422	29,983,504	29,984,419

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1557748	copy number gain	MS22854	SNP array	SNP genotyping analysis	21
nssv1570970	copy number loss	IS32395	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1557748	Remapped	Perfect	NC_000006.12:g.(29 881910_29883666)_( 29907748_29908663) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,881,910	29,883,666	29,907,748	29,908,663
nssv1570970	Remapped	Perfect	NC_000006.12:g.(29 881910_29883666)_( 29907748_29908663) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,881,910	29,883,666	29,907,748	29,908,663
nssv1557748	Remapped	Perfect	NC_000006.11:g.(29 849687_29851443)_( 29875525_29876440) dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	29,849,687	29,851,443	29,875,525	29,876,440
nssv1570970	Remapped	Perfect	NC_000006.11:g.(29 849687_29851443)_( 29875525_29876440) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	29,849,687	29,851,443	29,875,525	29,876,440
nssv1557748	Submitted genomic		NC_000006.10:g.(29 957666_29959422)_( 29983504_29984419) dup	NCBI36 (hg18)		NC_000006.10	Chr6	29,957,666	29,959,422	29,983,504	29,984,419
nssv1570970	Submitted genomic		NC_000006.10:g.(29 957666_29959422)_( 29983504_29984419) del	NCBI36 (hg18)		NC_000006.10	Chr6	29,957,666	29,959,422	29,983,504	29,984,419

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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