nsv883874
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17,899
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1508 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 711 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 1508 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 711 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 660 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv883874 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nsv883874 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_4 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nsv883874 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nsv883874 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_4 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nsv883874 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1564076 | copy number loss | IS30160 | SNP array | SNP genotyping analysis | 7 |
| nssv1565389 | copy number loss | IS30409 | SNP array | SNP genotyping analysis | 21 |
| nssv1566834 | copy number loss | IS30934 | SNP array | SNP genotyping analysis | 8 |
| nssv1571671 | copy number loss | IS32775 | SNP array | SNP genotyping analysis | 12 |
| nssv1574828 | copy number loss | IS33632 | SNP array | SNP genotyping analysis | 13 |
| nssv1574930 | copy number loss | IS33669 | SNP array | SNP genotyping analysis | 30 |
| nssv1593729 | copy number loss | IS39509 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1564076 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1565389 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1566834 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1571671 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1574828 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1574930 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1593729 | Remapped | Good | NT_167246.2:g.(116 3172_1163172)_(118 1070_1181070)del | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,163,172 | 1,163,172 | 1,181,070 | 1,181,070 |
| nssv1564076 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1565389 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1566834 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1571671 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1574828 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1574930 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1593729 | Remapped | Perfect | NC_000006.12:g.(29 906838_29907748)_( 29923646_29924659) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,906,838 | 29,907,748 | 29,923,646 | 29,924,659 |
| nssv1564076 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1565389 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1566834 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1571671 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1574828 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1574930 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1593729 | Remapped | Good | NT_167246.1:g.(116 8792_1168792)_(118 6690_1186690)delNT _167246.1:g.(11687 92_1168792)_(11866 90_1186690)del | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,168,792 | 1,168,792 | 1,186,690 | 1,186,690 |
| nssv1564076 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1565389 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1566834 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1571671 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1574828 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1574930 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1593729 | Remapped | Perfect | NC_000006.11:g.(29 874615_29875525)_( 29891423_29892436) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,874,615 | 29,875,525 | 29,891,423 | 29,892,436 |
| nssv1564076 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1565389 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1566834 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1571671 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1574828 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1574930 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 | ||
| nssv1593729 | Submitted genomic | NC_000006.10:g.(29 982594_29983504)_( 29999402_30000415) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,982,594 | 29,983,504 | 29,999,402 | 30,000,415 |