nsv883885
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19,617
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1505 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 709 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 1505 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 709 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 660 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv883885 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nsv883885 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_4 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nsv883885 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nsv883885 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_4 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nsv883885 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531171 | copy number gain | MS10356 | SNP array | SNP genotyping analysis | 9 |
| nssv1531314 | copy number gain | MS10391 | SNP array | SNP genotyping analysis | 11 |
| nssv1535477 | copy number gain | MS12234 | SNP array | SNP genotyping analysis | 13 |
| nssv1540017 | copy number gain | MS14653 | SNP array | SNP genotyping analysis | 8 |
| nssv1547301 | copy number gain | MS17306 | SNP array | SNP genotyping analysis | 8 |
| nssv1547606 | copy number gain | MS17489 | SNP array | SNP genotyping analysis | 8 |
| nssv1557901 | copy number gain | MS22970 | SNP array | SNP genotyping analysis | 13 |
| nssv1558238 | copy number gain | MS23174 | SNP array | SNP genotyping analysis | 11 |
| nssv1558336 | copy number gain | MS23212 | SNP array | SNP genotyping analysis | 9 |
| nssv1558511 | copy number gain | MS23301 | SNP array | SNP genotyping analysis | 8 |
| nssv1560181 | copy number gain | MS24357 | SNP array | SNP genotyping analysis | 14 |
| nssv1560997 | copy number gain | MS24790 | SNP array | SNP genotyping analysis | 5 |
| nssv1563349 | copy number gain | MS25966 | SNP array | SNP genotyping analysis | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531171 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1531314 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1535477 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1540017 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1547301 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1547606 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1557901 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1558238 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1558336 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1558511 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1560181 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1560997 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1563349 | Remapped | Good | NT_167246.2:g.(116 4082_1164082)_(118 3698_1183698)dup | GRCh38.p12 | Second Pass | NT_167246.2 | Chr6|NT_16 7246.2 | 1,164,082 | 1,164,082 | 1,183,698 | 1,183,698 |
| nssv1531171 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1531314 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1535477 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1540017 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1547301 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1547606 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1557901 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1558238 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1558336 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1558511 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1560181 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1560997 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1563349 | Remapped | Perfect | NC_000006.12:g.(29 907748_29908663)_( 29925263_29927334) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,907,748 | 29,908,663 | 29,925,263 | 29,927,334 |
| nssv1531171 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1531314 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1535477 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1540017 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1547301 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1547606 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1557901 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1558238 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1558336 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1558511 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1560181 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1560997 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1563349 | Remapped | Good | NT_167246.1:g.(116 9702_1169702)_(118 9318_1189318)dupNT _167246.1:g.(11697 02_1169702)_(11893 18_1189318)dup | GRCh37.p13 | Second Pass | NT_167246.1 | Chr6|NT_16 7246.1 | 1,169,702 | 1,169,702 | 1,189,318 | 1,189,318 |
| nssv1531171 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1531314 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1535477 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1540017 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1547301 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1547606 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1557901 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1558238 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1558336 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1558511 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1560181 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1560997 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1563349 | Remapped | Perfect | NC_000006.11:g.(29 875525_29876440)_( 29893040_29895111) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 29,875,525 | 29,876,440 | 29,893,040 | 29,895,111 |
| nssv1531171 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1531314 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1535477 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1540017 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1547301 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1547606 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1557901 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1558238 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1558336 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1558511 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1560181 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1560997 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 | ||
| nssv1563349 | Submitted genomic | NC_000006.10:g.(29 983504_29984419)_( 30001019_30003090) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 29,983,504 | 29,984,419 | 30,001,019 | 30,003,090 |