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dbVar

Database of genomic structural variation

nsv883891

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:14,688

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1433 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):29,908,663-29,923,273

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv883891	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	29,908,663	29,910,087	29,920,722	29,923,273
nsv883891	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_4	Second Pass	NT_167246.2	Chr6\|NT_16 7246.2	1,164,997	1,164,997	1,179,684	1,179,684
nsv883891	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	29,876,440	29,877,864	29,888,499	29,891,050
nsv883891	Remapped	Good	GRCh37.p13	ALT_REF_LOCI_4	Second Pass	NT_167246.1	Chr6\|NT_16 7246.1	1,170,617	1,170,617	1,185,304	1,185,304
nsv883891	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	29,984,419	29,985,843	29,996,478	29,999,029

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1521048	copy number loss	SP51389	SNP array	SNP genotyping analysis	13
nssv1521288	copy number loss	SP52329	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1521048	Remapped	Good	NT_167246.2:g.(116 4997_1164997)_(117 9684_1179684)del	GRCh38.p12	Second Pass	NT_167246.2	Chr6\|NT_16 7246.2	1,164,997	1,164,997	1,179,684	1,179,684
nssv1521288	Remapped	Good	NT_167246.2:g.(116 4997_1164997)_(117 9684_1179684)del	GRCh38.p12	Second Pass	NT_167246.2	Chr6\|NT_16 7246.2	1,164,997	1,164,997	1,179,684	1,179,684
nssv1521048	Remapped	Perfect	NC_000006.12:g.(29 908663_29910087)_( 29920722_29923273) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,908,663	29,910,087	29,920,722	29,923,273
nssv1521288	Remapped	Perfect	NC_000006.12:g.(29 908663_29910087)_( 29920722_29923273) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,908,663	29,910,087	29,920,722	29,923,273
nssv1521048	Remapped	Good	NT_167246.1:g.(117 0617_1170617)_(118 5304_1185304)delNT _167246.1:g.(11706 17_1170617)_(11853 04_1185304)del	GRCh37.p13	Second Pass	NT_167246.1	Chr6\|NT_16 7246.1	1,170,617	1,170,617	1,185,304	1,185,304
nssv1521288	Remapped	Good	NT_167246.1:g.(117 0617_1170617)_(118 5304_1185304)delNT _167246.1:g.(11706 17_1170617)_(11853 04_1185304)del	GRCh37.p13	Second Pass	NT_167246.1	Chr6\|NT_16 7246.1	1,170,617	1,170,617	1,185,304	1,185,304
nssv1521048	Remapped	Perfect	NC_000006.11:g.(29 876440_29877864)_( 29888499_29891050) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	29,876,440	29,877,864	29,888,499	29,891,050
nssv1521288	Remapped	Perfect	NC_000006.11:g.(29 876440_29877864)_( 29888499_29891050) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	29,876,440	29,877,864	29,888,499	29,891,050
nssv1521048	Submitted genomic		NC_000006.10:g.(29 984419_29985843)_( 29996478_29999029) del	NCBI36 (hg18)		NC_000006.10	Chr6	29,984,419	29,985,843	29,996,478	29,999,029
nssv1521288	Submitted genomic		NC_000006.10:g.(29 984419_29985843)_( 29996478_29999029) del	NCBI36 (hg18)		NC_000006.10	Chr6	29,984,419	29,985,843	29,996,478	29,999,029

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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