Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv884869

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:20,905

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2053 SVs from 88 studies. See in: genome view

Remapped(Score: Perfect):32,489,473-32,510,377

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv884869	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	32,489,473	32,491,609	32,508,838	32,510,377
nsv884869	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	32,457,250	32,459,386	32,476,615	32,478,154
nsv884869	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	32,565,228	32,567,364	32,584,593	32,586,132

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1519853	copy number gain	SP50580	SNP array	SNP genotyping analysis	13
nssv1520869	copy number gain	SP51280	SNP array	SNP genotyping analysis	7
nssv1521860	copy number gain	SP52614	SNP array	SNP genotyping analysis	13
nssv1597000	copy number gain	IS40702	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1519853	Remapped	Perfect	NC_000006.12:g.(32 489473_32491609)_( 32508838_32510377) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,489,473	32,491,609	32,508,838	32,510,377
nssv1520869	Remapped	Perfect	NC_000006.12:g.(32 489473_32491609)_( 32508838_32510377) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,489,473	32,491,609	32,508,838	32,510,377
nssv1521860	Remapped	Perfect	NC_000006.12:g.(32 489473_32491609)_( 32508838_32510377) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,489,473	32,491,609	32,508,838	32,510,377
nssv1597000	Remapped	Perfect	NC_000006.12:g.(32 489473_32491609)_( 32508838_32510377) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,489,473	32,491,609	32,508,838	32,510,377
nssv1519853	Remapped	Perfect	NC_000006.11:g.(32 457250_32459386)_( 32476615_32478154) dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,457,250	32,459,386	32,476,615	32,478,154
nssv1520869	Remapped	Perfect	NC_000006.11:g.(32 457250_32459386)_( 32476615_32478154) dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,457,250	32,459,386	32,476,615	32,478,154
nssv1521860	Remapped	Perfect	NC_000006.11:g.(32 457250_32459386)_( 32476615_32478154) dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,457,250	32,459,386	32,476,615	32,478,154
nssv1597000	Remapped	Perfect	NC_000006.11:g.(32 457250_32459386)_( 32476615_32478154) dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,457,250	32,459,386	32,476,615	32,478,154
nssv1519853	Submitted genomic		NC_000006.10:g.(32 565228_32567364)_( 32584593_32586132) dup	NCBI36 (hg18)		NC_000006.10	Chr6	32,565,228	32,567,364	32,584,593	32,586,132
nssv1520869	Submitted genomic		NC_000006.10:g.(32 565228_32567364)_( 32584593_32586132) dup	NCBI36 (hg18)		NC_000006.10	Chr6	32,565,228	32,567,364	32,584,593	32,586,132
nssv1521860	Submitted genomic		NC_000006.10:g.(32 565228_32567364)_( 32584593_32586132) dup	NCBI36 (hg18)		NC_000006.10	Chr6	32,565,228	32,567,364	32,584,593	32,586,132
nssv1597000	Submitted genomic		NC_000006.10:g.(32 565228_32567364)_( 32584593_32586132) dup	NCBI36 (hg18)		NC_000006.10	Chr6	32,565,228	32,567,364	32,584,593	32,586,132

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI