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dbVar

Database of genomic structural variation

nsv885106

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:23,698

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2812 SVs from 97 studies. See in: genome view

Remapped(Score: Perfect):32,533,207-32,556,904

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv885106	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	32,533,207	32,533,367	32,556,447	32,556,904
nsv885106	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	32,500,984	32,501,144	32,524,224	32,524,681
nsv885106	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	32,608,962	32,609,122	32,632,202	32,632,659

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1526938	copy number loss	SP57986	SNP array	SNP genotyping analysis	9
nssv1554843	copy number loss	MS21036	SNP array	SNP genotyping analysis	15
nssv1590662	copy number loss	IS38549	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1526938	Remapped	Perfect	NC_000006.12:g.(32 533207_32533367)_( 32556447_32556904) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,533,207	32,533,367	32,556,447	32,556,904
nssv1554843	Remapped	Perfect	NC_000006.12:g.(32 533207_32533367)_( 32556447_32556904) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,533,207	32,533,367	32,556,447	32,556,904
nssv1590662	Remapped	Perfect	NC_000006.12:g.(32 533207_32533367)_( 32556447_32556904) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,533,207	32,533,367	32,556,447	32,556,904
nssv1526938	Remapped	Perfect	NC_000006.11:g.(32 500984_32501144)_( 32524224_32524681) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,500,984	32,501,144	32,524,224	32,524,681
nssv1554843	Remapped	Perfect	NC_000006.11:g.(32 500984_32501144)_( 32524224_32524681) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,500,984	32,501,144	32,524,224	32,524,681
nssv1590662	Remapped	Perfect	NC_000006.11:g.(32 500984_32501144)_( 32524224_32524681) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,500,984	32,501,144	32,524,224	32,524,681
nssv1526938	Submitted genomic		NC_000006.10:g.(32 608962_32609122)_( 32632202_32632659) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,608,962	32,609,122	32,632,202	32,632,659
nssv1554843	Submitted genomic		NC_000006.10:g.(32 608962_32609122)_( 32632202_32632659) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,608,962	32,609,122	32,632,202	32,632,659
nssv1590662	Submitted genomic		NC_000006.10:g.(32 608962_32609122)_( 32632202_32632659) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,608,962	32,609,122	32,632,202	32,632,659

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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