nsv885201
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,777
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1810 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1810 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 988 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv885201 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nsv885201 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nsv885201 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1501447 | copy number loss | SP50850 | SNP array | SNP genotyping analysis | 20 |
| nssv1501583 | copy number loss | SP50927 | SNP array | SNP genotyping analysis | 22 |
| nssv1507069 | copy number loss | SP54468 | SNP array | SNP genotyping analysis | 24 |
| nssv1512689 | copy number loss | SP55586 | SNP array | SNP genotyping analysis | 12 |
| nssv1512938 | copy number loss | SP55655 | SNP array | SNP genotyping analysis | 22 |
| nssv1519105 | copy number loss | SP80955 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1501447 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1501583 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1507069 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1512689 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1512938 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1519105 | Remapped | Perfect | NC_000006.12:g.(32 540452_32541110)_( 32549621_32551228) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,540,452 | 32,541,110 | 32,549,621 | 32,551,228 |
| nssv1501447 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1501583 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1507069 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1512689 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1512938 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1519105 | Remapped | Perfect | NC_000006.11:g.(32 508229_32508887)_( 32517398_32519005) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,508,229 | 32,508,887 | 32,517,398 | 32,519,005 |
| nssv1501447 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 | ||
| nssv1501583 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 | ||
| nssv1507069 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 | ||
| nssv1512689 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 | ||
| nssv1512938 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 | ||
| nssv1519105 | Submitted genomic | NC_000006.10:g.(32 616207_32616865)_( 32625376_32626983) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,616,207 | 32,616,865 | 32,625,376 | 32,626,983 |