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dbVar

Database of genomic structural variation

nsv885206

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:12,590

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1955 SVs from 94 studies. See in: genome view

Remapped(Score: Perfect):32,540,452-32,553,041

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv885206	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	32,540,452	32,541,110	32,553,010	32,553,041
nsv885206	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	32,508,229	32,508,887	32,520,787	32,520,818
nsv885206	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	32,616,207	32,616,865	32,628,765	32,628,796

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1507153	copy number loss	SP54480	SNP array	SNP genotyping analysis	15
nssv1516031	copy number loss	SP56380	SNP array	SNP genotyping analysis	24
nssv1516535	copy number loss	SP56856	SNP array	SNP genotyping analysis	21
nssv1519577	copy number loss	SP81097	SNP array	SNP genotyping analysis	17

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1507153	Remapped	Perfect	NC_000006.12:g.(32 540452_32541110)_( 32553010_32553041) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,540,452	32,541,110	32,553,010	32,553,041
nssv1516031	Remapped	Perfect	NC_000006.12:g.(32 540452_32541110)_( 32553010_32553041) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,540,452	32,541,110	32,553,010	32,553,041
nssv1516535	Remapped	Perfect	NC_000006.12:g.(32 540452_32541110)_( 32553010_32553041) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,540,452	32,541,110	32,553,010	32,553,041
nssv1519577	Remapped	Perfect	NC_000006.12:g.(32 540452_32541110)_( 32553010_32553041) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,540,452	32,541,110	32,553,010	32,553,041
nssv1507153	Remapped	Perfect	NC_000006.11:g.(32 508229_32508887)_( 32520787_32520818) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,508,229	32,508,887	32,520,787	32,520,818
nssv1516031	Remapped	Perfect	NC_000006.11:g.(32 508229_32508887)_( 32520787_32520818) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,508,229	32,508,887	32,520,787	32,520,818
nssv1516535	Remapped	Perfect	NC_000006.11:g.(32 508229_32508887)_( 32520787_32520818) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,508,229	32,508,887	32,520,787	32,520,818
nssv1519577	Remapped	Perfect	NC_000006.11:g.(32 508229_32508887)_( 32520787_32520818) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,508,229	32,508,887	32,520,787	32,520,818
nssv1507153	Submitted genomic		NC_000006.10:g.(32 616207_32616865)_( 32628765_32628796) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,616,207	32,616,865	32,628,765	32,628,796
nssv1516031	Submitted genomic		NC_000006.10:g.(32 616207_32616865)_( 32628765_32628796) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,616,207	32,616,865	32,628,765	32,628,796
nssv1516535	Submitted genomic		NC_000006.10:g.(32 616207_32616865)_( 32628765_32628796) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,616,207	32,616,865	32,628,765	32,628,796
nssv1519577	Submitted genomic		NC_000006.10:g.(32 616207_32616865)_( 32628765_32628796) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,616,207	32,616,865	32,628,765	32,628,796

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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