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nsv885535

  • Variant Calls:7
  • Validation:Not tested
  • Clinical Assertions: No
  • Region Size:19,481

Links to Other Resources

Source: NCBI

Genome View

Select assembly:
Overlapping variant regions from other studies: 1373 SVs from 84 studies. See in: genome view    
Remapped(Score: Perfect):32,633,026-32,652,506Question Mark
Overlapping variant regions from other studies: 519 SVs from 34 studies. See in: genome view    
Remapped(Score: Pass):3,934,081-3,946,695Question Mark
Overlapping variant regions from other studies: 512 SVs from 34 studies. See in: genome view    
Remapped(Score: Pass):4,034,950-4,047,564Question Mark
Overlapping variant regions from other studies: 425 SVs from 32 studies. See in: genome view    
Remapped(Score: Pass):4,051,338-4,063,916Question Mark
Overlapping variant regions from other studies: 541 SVs from 29 studies. See in: genome view    
Remapped(Score: Pass):3,876,940-3,889,518Question Mark
Overlapping variant regions from other studies: 1373 SVs from 84 studies. See in: genome view    
Remapped(Score: Perfect):32,600,803-32,620,283Question Mark
Overlapping variant regions from other studies: 555 SVs from 30 studies. See in: genome view    
Remapped(Score: Pass):3,882,525-3,895,103Question Mark
Overlapping variant regions from other studies: 519 SVs from 34 studies. See in: genome view    
Remapped(Score: Pass):3,939,666-3,952,277Question Mark
Overlapping variant regions from other studies: 623 SVs from 34 studies. See in: genome view    
Remapped(Score: Pass):4,034,248-4,046,862Question Mark
Overlapping variant regions from other studies: 425 SVs from 32 studies. See in: genome view    
Remapped(Score: Pass):4,056,958-4,069,536Question Mark
Overlapping variant regions from other studies: 843 SVs from 26 studies. See in: genome view    
Submitted genomic32,708,781-32,728,261Question Mark

Variant Region Placement Information

Variant Region IDPlacement TypeScoreAssemblyAssembly UnitReciprocitySequence IDChrOuter StartInner StartInner StopOuter Stop
nsv885535RemappedPerfectGRCh38.p12Primary AssemblyFirst PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nsv885535RemappedPassGRCh38.p12ALT_REF_LOCI_5Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nsv885535RemappedPassGRCh38.p12ALT_REF_LOCI_7Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nsv885535RemappedPassGRCh38.p12ALT_REF_LOCI_4Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nsv885535RemappedPassGRCh38.p12ALT_REF_LOCI_3Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nsv885535RemappedPerfectGRCh37.p13Primary AssemblyFirst PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nsv885535RemappedPassGRCh37.p13ALT_REF_LOCI_3Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nsv885535RemappedPassGRCh37.p13ALT_REF_LOCI_5Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nsv885535RemappedPassGRCh37.p13ALT_REF_LOCI_7Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nsv885535RemappedPassGRCh37.p13ALT_REF_LOCI_4Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nsv885535Submitted genomicNCBI36 (hg18)Primary AssemblyNC_000006.10Chr632,708,78132,709,75332,723,92832,728,261

Variant Call Information

Variant Call IDTypeSample IDMethodAnalysisOther Calls in this Sample and Study
nssv1534260copy number gainMS11497SNP arraySNP genotyping analysis28
nssv1544155copy number lossMS16283SNP arraySNP genotyping analysis9
nssv1552467copy number lossMS19438SNP arraySNP genotyping analysis14
nssv1553256copy number lossMS19858SNP arraySNP genotyping analysis10
nssv1554225copy number lossMS20671SNP arraySNP genotyping analysis14
nssv1554718copy number gainMS20925SNP arraySNP genotyping analysis7
nssv1557724copy number lossMS22848SNP arraySNP genotyping analysis8

Variant Call Placement Information

Variant Call IDPlacement TypeScoreHGVSAssemblyReciprocitySequence IDChrOuter StartInner StartInner StopOuter Stop
nssv1534260RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)dup
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1544155RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)del
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1552467RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)del
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1553256RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)del
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1554225RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)del
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1554718RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)dup
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1557724RemappedPassNT_167247.2:g.(393
4081_3934081)_(394
6695_?)del
GRCh38.p12Second PassNT_167247.2Chr6|NT_16
7247.2
3,934,0813,934,0813,946,695-
nssv1534260RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)dup
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1544155RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)del
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1552467RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)del
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1553256RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)del
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1554225RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)del
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1554718RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)dup
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1557724RemappedPassNT_167249.2:g.(403
4950_4034950)_(404
7564_?)del
GRCh38.p12Second PassNT_167249.2Chr6|NT_16
7249.2
4,034,9504,034,9504,047,564-
nssv1534260RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)dup
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1544155RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)del
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1552467RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)del
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1553256RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)del
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1554225RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)del
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1554718RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)dup
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1557724RemappedPassNT_167246.2:g.(405
1338_4051338)_(406
3916_?)del
GRCh38.p12Second PassNT_167246.2Chr6|NT_16
7246.2
4,051,3384,051,3384,063,916-
nssv1534260RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)dup
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1544155RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)del
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1552467RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)del
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1553256RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)del
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1554225RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)del
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1554718RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)dup
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1557724RemappedPassNT_167245.2:g.(387
6940_3876940)_(388
9518_?)del
GRCh38.p12Second PassNT_167245.2Chr6|NT_16
7245.2
3,876,9403,876,9403,889,518-
nssv1534260RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
dup
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1544155RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
del
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1552467RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
del
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1553256RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
del
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1554225RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
del
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1554718RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
dup
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1557724RemappedPerfectNC_000006.12:g.(32
633026_32633998)_(
32648173_32652506)
del
GRCh38.p12First PassNC_000006.12Chr632,633,02632,633,99832,648,17332,652,506
nssv1534260RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)dupNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
up
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1544155RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)delNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
el
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1552467RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)delNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
el
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1553256RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)delNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
el
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1554225RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)delNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
el
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1554718RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)dupNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
up
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1557724RemappedPassNT_167245.1:g.(388
2525_3882525)_(389
5103_?)delNT_16724
5.1:g.(3882525_388
2525)_(3895103_?)d
el
GRCh37.p13Second PassNT_167245.1Chr6|NT_16
7245.1
3,882,5253,882,5253,895,103-
nssv1534260RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)dupNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
up
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1544155RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)delNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
el
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1552467RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)delNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
el
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1553256RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)delNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
el
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1554225RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)delNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
el
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1554718RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)dupNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
up
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1557724RemappedPassNT_167247.1:g.(393
9666_3939666)_(395
2277_?)delNT_16724
7.1:g.(3939666_393
9666)_(3952277_?)d
el
GRCh37.p13Second PassNT_167247.1Chr6|NT_16
7247.1
3,939,6663,939,6663,952,277-
nssv1534260RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)dup
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1544155RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)del
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1552467RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)del
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1553256RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)del
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1554225RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)del
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1554718RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)dup
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1557724RemappedPassNT_167249.1:g.(403
4248_4034248)_(404
6862_?)del
GRCh37.p13Second PassNT_167249.1Chr6|NT_16
7249.1
4,034,2484,034,2484,046,862-
nssv1534260RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)dupNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
up
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1544155RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)delNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
el
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1552467RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)delNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
el
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1553256RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)delNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
el
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1554225RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)delNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
el
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1554718RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)dupNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
up
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1557724RemappedPassNT_167246.1:g.(405
6958_4056958)_(406
9536_?)delNT_16724
6.1:g.(4056958_405
6958)_(4069536_?)d
el
GRCh37.p13Second PassNT_167246.1Chr6|NT_16
7246.1
4,056,9584,056,9584,069,536-
nssv1534260RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
dup
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1544155RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
del
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1552467RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
del
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1553256RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
del
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1554225RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
del
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1554718RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
dup
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1557724RemappedPerfectNC_000006.11:g.(32
600803_32601775)_(
32615950_32620283)
del
GRCh37.p13First PassNC_000006.11Chr632,600,80332,601,77532,615,95032,620,283
nssv1534260Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
dup
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1544155Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
del
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1552467Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
del
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1553256Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
del
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1554225Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
del
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1554718Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
dup
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261
nssv1557724Submitted genomicNC_000006.10:g.(32
708781_32709753)_(
32723928_32728261)
del
NCBI36 (hg18)NC_000006.10Chr632,708,78132,709,75332,723,92832,728,261

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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