nsv885553
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:56,305
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2355 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 741 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 592 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 824 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 2355 SVs from 97 studies. See in: genome view
Overlapping variant regions from other studies: 929 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 740 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 893 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 1342 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv885553 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,633,998 | 32,634,595 | 32,689,801 | 32,690,302 |
| nsv885553 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_5 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 3,935,053 | 3,935,053 | 3,979,844 | - |
| nsv885553 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,035,922 | 4,035,922 | 4,065,138 | - |
| nsv885553 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,877,911 | 3,877,911 | 3,925,201 | - |
| nsv885553 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,601,775 | 32,602,372 | 32,657,578 | 32,658,079 |
| nsv885553 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_3 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,883,496 | 3,883,496 | 3,930,786 | - |
| nsv885553 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_5 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 3,940,638 | 3,940,638 | 3,985,429 | - |
| nsv885553 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_7 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,035,220 | 4,035,220 | 4,064,436 | - |
| nsv885553 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,709,753 | 32,710,350 | 32,765,556 | 32,766,057 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531454 | copy number loss | MS10445 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531454 | Remapped | Pass | NT_167247.2:g.(393 5053_3935053)_(397 9844_?)del | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 3,935,053 | 3,935,053 | 3,979,844 | - |
| nssv1531454 | Remapped | Pass | NT_167249.2:g.(403 5922_4035922)_(406 5138_?)del | GRCh38.p12 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,035,922 | 4,035,922 | 4,065,138 | - |
| nssv1531454 | Remapped | Pass | NT_167245.2:g.(387 7911_3877911)_(392 5201_?)del | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,877,911 | 3,877,911 | 3,925,201 | - |
| nssv1531454 | Remapped | Perfect | NC_000006.12:g.(32 633998_32634595)_( 32689801_32690302) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,633,998 | 32,634,595 | 32,689,801 | 32,690,302 |
| nssv1531454 | Remapped | Pass | NT_167245.1:g.(388 3496_3883496)_(393 0786_?)delNT_16724 5.1:g.(3883496_388 3496)_(3930786_?)d el | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,883,496 | 3,883,496 | 3,930,786 | - |
| nssv1531454 | Remapped | Pass | NT_167247.1:g.(394 0638_3940638)_(398 5429_?)delNT_16724 7.1:g.(3940638_394 0638)_(3985429_?)d el | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 3,940,638 | 3,940,638 | 3,985,429 | - |
| nssv1531454 | Remapped | Pass | NT_167249.1:g.(403 5220_4035220)_(406 4436_?)del | GRCh37.p13 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,035,220 | 4,035,220 | 4,064,436 | - |
| nssv1531454 | Remapped | Perfect | NC_000006.11:g.(32 601775_32602372)_( 32657578_32658079) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,601,775 | 32,602,372 | 32,657,578 | 32,658,079 |
| nssv1531454 | Submitted genomic | NC_000006.10:g.(32 709753_32710350)_( 32765556_32766057) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,709,753 | 32,710,350 | 32,765,556 | 32,766,057 |