nsv885569
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:28,998
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1783 SVs from 88 studies. See in: genome view
Overlapping variant regions from other studies: 546 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 500 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 665 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 1783 SVs from 88 studies. See in: genome view
Overlapping variant regions from other studies: 770 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 545 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 801 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 1096 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv885569 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,635,983 | 32,637,290 | 32,663,681 | 32,664,980 |
| nsv885569 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_5 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 3,937,036 | 3,937,036 | 3,961,458 | 3,961,458 |
| nsv885569 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,037,905 | 4,037,905 | 4,062,218 | 4,062,218 |
| nsv885569 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,879,893 | 3,879,893 | 3,905,815 | 3,905,815 |
| nsv885569 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,603,760 | 32,605,067 | 32,631,458 | 32,632,757 |
| nsv885569 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_3 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,885,478 | 3,885,478 | 3,911,400 | 3,911,400 |
| nsv885569 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_5 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 3,942,621 | 3,942,621 | 3,967,043 | 3,967,043 |
| nsv885569 | Remapped | Pass | GRCh37.p13 | ALT_REF_LOCI_7 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,037,203 | 4,037,203 | 4,061,516 | 4,061,516 |
| nsv885569 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,711,738 | 32,713,045 | 32,739,436 | 32,740,735 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1503263 | copy number gain | SP52019 | SNP array | SNP genotyping analysis | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1503263 | Remapped | Pass | NT_167247.2:g.(393 7036_3937036)_(396 1458_3961458)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 3,937,036 | 3,937,036 | 3,961,458 | 3,961,458 |
| nssv1503263 | Remapped | Pass | NT_167249.2:g.(403 7905_4037905)_(406 2218_4062218)dup | GRCh38.p12 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,037,905 | 4,037,905 | 4,062,218 | 4,062,218 |
| nssv1503263 | Remapped | Pass | NT_167245.2:g.(387 9893_3879893)_(390 5815_3905815)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,879,893 | 3,879,893 | 3,905,815 | 3,905,815 |
| nssv1503263 | Remapped | Perfect | NC_000006.12:g.(32 635983_32637290)_( 32663681_32664980) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,635,983 | 32,637,290 | 32,663,681 | 32,664,980 |
| nssv1503263 | Remapped | Pass | NT_167245.1:g.(388 5478_3885478)_(391 1400_3911400)dupNT _167245.1:g.(38854 78_3885478)_(39114 00_3911400)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,885,478 | 3,885,478 | 3,911,400 | 3,911,400 |
| nssv1503263 | Remapped | Pass | NT_167247.1:g.(394 2621_3942621)_(396 7043_3967043)dupNT _167247.1:g.(39426 21_3942621)_(39670 43_3967043)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 3,942,621 | 3,942,621 | 3,967,043 | 3,967,043 |
| nssv1503263 | Remapped | Pass | NT_167249.1:g.(403 7203_4037203)_(406 1516_4061516)dup | GRCh37.p13 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,037,203 | 4,037,203 | 4,061,516 | 4,061,516 |
| nssv1503263 | Remapped | Perfect | NC_000006.11:g.(32 603760_32605067)_( 32631458_32632757) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,603,760 | 32,605,067 | 32,631,458 | 32,632,757 |
| nssv1503263 | Submitted genomic | NC_000006.10:g.(32 711738_32713045)_( 32739436_32740735) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,711,738 | 32,713,045 | 32,739,436 | 32,740,735 |