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dbVar

Database of genomic structural variation

nsv885621

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:43,298

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1960 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):32,646,260-32,689,557

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv885621	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	32,646,260	32,647,933	32,687,441	32,689,557
nsv885621	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_3	Second Pass	NT_167245.2	Chr6\|NT_16 7245.2	-	3,898,896	3,925,201	-
nsv885621	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	32,614,037	32,615,710	32,655,218	32,657,334
nsv885621	Remapped	Pass	GRCh37.p13	ALT_REF_LOCI_3	Second Pass	NT_167245.1	Chr6\|NT_16 7245.1	-	3,904,481	3,930,786	-
nsv885621	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	32,722,015	32,723,688	32,763,196	32,765,312

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1552448	copy number loss	MS19437	SNP array	SNP genotyping analysis	18

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1552448	Remapped	Pass	NT_167245.2:g.(?_3 898896)_(3925201_? )del	GRCh38.p12	Second Pass	NT_167245.2	Chr6\|NT_16 7245.2	-	3,898,896	3,925,201	-
nssv1552448	Remapped	Perfect	NC_000006.12:g.(32 646260_32647933)_( 32687441_32689557) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	32,646,260	32,647,933	32,687,441	32,689,557
nssv1552448	Remapped	Pass	NT_167245.1:g.(?_3 904481)_(3930786_? )delNT_167245.1:g. (?_3904481)_(39307 86_?)del	GRCh37.p13	Second Pass	NT_167245.1	Chr6\|NT_16 7245.1	-	3,904,481	3,930,786	-
nssv1552448	Remapped	Perfect	NC_000006.11:g.(32 614037_32615710)_( 32655218_32657334) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	32,614,037	32,615,710	32,655,218	32,657,334
nssv1552448	Submitted genomic		NC_000006.10:g.(32 722015_32723688)_( 32763196_32765312) del	NCBI36 (hg18)		NC_000006.10	Chr6	32,722,015	32,723,688	32,763,196	32,765,312

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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