nsv885690
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,814
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 309 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 73 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 309 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 119 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv885690 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,701,069 | 32,701,307 | 32,706,122 | 32,706,872 |
| nsv885690 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_5 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 4,000,320 | 4,000,320 | 4,006,111 | 4,006,111 |
| nsv885690 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_7 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,101,689 | 4,101,689 | 4,107,502 | 4,107,502 |
| nsv885690 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,945,685 | 3,945,685 | 3,951,476 | 3,951,476 |
| nsv885690 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,668,846 | 32,669,084 | 32,673,899 | 32,674,649 |
| nsv885690 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_3 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,951,270 | 3,951,270 | 3,957,061 | 3,957,061 |
| nsv885690 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_5 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 4,005,905 | 4,005,905 | 4,011,696 | 4,011,696 |
| nsv885690 | Remapped | Good | GRCh37.p13 | ALT_REF_LOCI_7 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,100,987 | 4,100,987 | 4,106,800 | 4,106,800 |
| nsv885690 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,776,824 | 32,777,062 | 32,781,877 | 32,782,627 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1571241 | copy number gain | IS32653 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1571241 | Remapped | Good | NT_167247.2:g.(400 0320_4000320)_(400 6111_4006111)dup | GRCh38.p12 | Second Pass | NT_167247.2 | Chr6|NT_16 7247.2 | 4,000,320 | 4,000,320 | 4,006,111 | 4,006,111 |
| nssv1571241 | Remapped | Good | NT_167249.2:g.(410 1689_4101689)_(410 7502_4107502)dup | GRCh38.p12 | Second Pass | NT_167249.2 | Chr6|NT_16 7249.2 | 4,101,689 | 4,101,689 | 4,107,502 | 4,107,502 |
| nssv1571241 | Remapped | Good | NT_167245.2:g.(394 5685_3945685)_(395 1476_3951476)dup | GRCh38.p12 | Second Pass | NT_167245.2 | Chr6|NT_16 7245.2 | 3,945,685 | 3,945,685 | 3,951,476 | 3,951,476 |
| nssv1571241 | Remapped | Perfect | NC_000006.12:g.(32 701069_32701307)_( 32706122_32706872) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,701,069 | 32,701,307 | 32,706,122 | 32,706,872 |
| nssv1571241 | Remapped | Good | NT_167245.1:g.(395 1270_3951270)_(395 7061_3957061)dupNT _167245.1:g.(39512 70_3951270)_(39570 61_3957061)dup | GRCh37.p13 | Second Pass | NT_167245.1 | Chr6|NT_16 7245.1 | 3,951,270 | 3,951,270 | 3,957,061 | 3,957,061 |
| nssv1571241 | Remapped | Good | NT_167247.1:g.(400 5905_4005905)_(401 1696_4011696)dupNT _167247.1:g.(40059 05_4005905)_(40116 96_4011696)dup | GRCh37.p13 | Second Pass | NT_167247.1 | Chr6|NT_16 7247.1 | 4,005,905 | 4,005,905 | 4,011,696 | 4,011,696 |
| nssv1571241 | Remapped | Good | NT_167249.1:g.(410 0987_4100987)_(410 6800_4106800)dup | GRCh37.p13 | Second Pass | NT_167249.1 | Chr6|NT_16 7249.1 | 4,100,987 | 4,100,987 | 4,106,800 | 4,106,800 |
| nssv1571241 | Remapped | Perfect | NC_000006.11:g.(32 668846_32669084)_( 32673899_32674649) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,668,846 | 32,669,084 | 32,673,899 | 32,674,649 |
| nssv1571241 | Submitted genomic | NC_000006.10:g.(32 776824_32777062)_( 32781877_32782627) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,776,824 | 32,777,062 | 32,781,877 | 32,782,627 |