nsv885967
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:452,498
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1330 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1330 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 448 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv885967 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 62,442,819 | 62,450,885 | 62,882,976 | 62,895,316 |
nsv885967 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 63,152,724 | 63,160,790 | 63,592,881 | 63,605,221 |
nsv885967 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 63,210,683 | 63,218,749 | 63,650,840 | 63,663,180 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1598977 | copy number loss | IS41043 | SNP array | SNP genotyping analysis | 96 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1598977 | Remapped | Perfect | NC_000006.12:g.(62 442819_62450885)_( 62882976_62895316) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 62,442,819 | 62,450,885 | 62,882,976 | 62,895,316 |
nssv1598977 | Remapped | Perfect | NC_000006.11:g.(63 152724_63160790)_( 63592881_63605221) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 63,152,724 | 63,160,790 | 63,592,881 | 63,605,221 |
nssv1598977 | Submitted genomic | NC_000006.10:g.(63 210683_63218749)_( 63650840_63663180) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 63,210,683 | 63,218,749 | 63,650,840 | 63,663,180 |