nsv886264
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,087
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2499 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2499 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 1198 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv886264 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 78,264,675 | 78,265,373 | 78,322,025 | 78,323,761 |
| nsv886264 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 78,974,392 | 78,975,090 | 79,031,742 | 79,033,478 |
| nsv886264 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 79,031,111 | 79,031,809 | 79,088,461 | 79,090,197 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1595502 | copy number loss | IS40240 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1595502 | Remapped | Perfect | NC_000006.12:g.(78 264675_78265373)_( 78322025_78323761) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 78,264,675 | 78,265,373 | 78,322,025 | 78,323,761 |
| nssv1595502 | Remapped | Perfect | NC_000006.11:g.(78 974392_78975090)_( 79031742_79033478) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 78,974,392 | 78,975,090 | 79,031,742 | 79,033,478 |
| nssv1595502 | Submitted genomic | NC_000006.10:g.(79 031111_79031809)_( 79088461_79090197) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 79,031,111 | 79,031,809 | 79,088,461 | 79,090,197 |