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dbVar

Database of genomic structural variation

nsv886470

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:114,720

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 420 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):102,436,713-102,551,432

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv886470	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	102,436,713	102,439,801	102,537,592	102,551,432
nsv886470	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	102,884,588	102,887,676	102,985,467	102,999,307
nsv886470	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	102,991,281	102,994,369	103,092,160	103,106,000

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1534565	copy number loss	MS11669	SNP array	SNP genotyping analysis	42
nssv1581755	copy number loss	IS35717	SNP array	SNP genotyping analysis	32

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1534565	Remapped	Perfect	NC_000006.12:g.(10 2436713_102439801) _(102537592_102551 432)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	102,436,713	102,439,801	102,537,592	102,551,432
nssv1581755	Remapped	Perfect	NC_000006.12:g.(10 2436713_102439801) _(102537592_102551 432)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	102,436,713	102,439,801	102,537,592	102,551,432
nssv1534565	Remapped	Perfect	NC_000006.11:g.(10 2884588_102887676) _(102985467_102999 307)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	102,884,588	102,887,676	102,985,467	102,999,307
nssv1581755	Remapped	Perfect	NC_000006.11:g.(10 2884588_102887676) _(102985467_102999 307)del	GRCh37.p13	First Pass	NC_000006.11	Chr6	102,884,588	102,887,676	102,985,467	102,999,307
nssv1534565	Submitted genomic		NC_000006.10:g.(10 2991281_102994369) _(103092160_103106 000)del	NCBI36 (hg18)		NC_000006.10	Chr6	102,991,281	102,994,369	103,092,160	103,106,000
nssv1581755	Submitted genomic		NC_000006.10:g.(10 2991281_102994369) _(103092160_103106 000)del	NCBI36 (hg18)		NC_000006.10	Chr6	102,991,281	102,994,369	103,092,160	103,106,000

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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