nsv886489
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:655,967
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2401 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 2401 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 970 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv886489 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 102,926,703 | 102,933,095 | 103,576,057 | 103,582,669 |
| nsv886489 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 103,374,578 | 103,380,970 | 104,023,932 | 104,030,544 |
| nsv886489 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 103,481,271 | 103,487,663 | 104,130,625 | 104,137,237 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1541159 | copy number loss | MS15199 | SNP array | SNP genotyping analysis | 167 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1541159 | Remapped | Perfect | NC_000006.12:g.(10 2926703_102933095) _(103576057_103582 669)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 102,926,703 | 102,933,095 | 103,576,057 | 103,582,669 |
| nssv1541159 | Remapped | Perfect | NC_000006.11:g.(10 3374578_103380970) _(104023932_104030 544)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 103,374,578 | 103,380,970 | 104,023,932 | 104,030,544 |
| nssv1541159 | Submitted genomic | NC_000006.10:g.(10 3481271_103487663) _(104130625_104137 237)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 103,481,271 | 103,487,663 | 104,130,625 | 104,137,237 |