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dbVar

Database of genomic structural variation

nsv886565

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:83,460

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 333 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):117,174,963-117,258,422

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv886565	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	117,174,963	117,189,040	117,243,491	117,258,422
nsv886565	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	117,496,126	117,510,203	117,564,654	117,579,585
nsv886565	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	117,602,819	117,616,896	117,671,347	117,686,278

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1523523	copy number gain	SP54063	SNP array	SNP genotyping analysis	12
nssv1524084	copy number gain	SP54836	SNP array	SNP genotyping analysis	10
nssv1526926	copy number gain	SP57965	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1523523	Remapped	Perfect	NC_000006.12:g.(11 7174963_117189040) _(117243491_117258 422)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	117,174,963	117,189,040	117,243,491	117,258,422
nssv1524084	Remapped	Perfect	NC_000006.12:g.(11 7174963_117189040) _(117243491_117258 422)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	117,174,963	117,189,040	117,243,491	117,258,422
nssv1526926	Remapped	Perfect	NC_000006.12:g.(11 7174963_117189040) _(117243491_117258 422)dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	117,174,963	117,189,040	117,243,491	117,258,422
nssv1523523	Remapped	Perfect	NC_000006.11:g.(11 7496126_117510203) _(117564654_117579 585)dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	117,496,126	117,510,203	117,564,654	117,579,585
nssv1524084	Remapped	Perfect	NC_000006.11:g.(11 7496126_117510203) _(117564654_117579 585)dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	117,496,126	117,510,203	117,564,654	117,579,585
nssv1526926	Remapped	Perfect	NC_000006.11:g.(11 7496126_117510203) _(117564654_117579 585)dup	GRCh37.p13	First Pass	NC_000006.11	Chr6	117,496,126	117,510,203	117,564,654	117,579,585
nssv1523523	Submitted genomic		NC_000006.10:g.(11 7602819_117616896) _(117671347_117686 278)dup	NCBI36 (hg18)		NC_000006.10	Chr6	117,602,819	117,616,896	117,671,347	117,686,278
nssv1524084	Submitted genomic		NC_000006.10:g.(11 7602819_117616896) _(117671347_117686 278)dup	NCBI36 (hg18)		NC_000006.10	Chr6	117,602,819	117,616,896	117,671,347	117,686,278
nssv1526926	Submitted genomic		NC_000006.10:g.(11 7602819_117616896) _(117671347_117686 278)dup	NCBI36 (hg18)		NC_000006.10	Chr6	117,602,819	117,616,896	117,671,347	117,686,278

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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