nsv886702
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:142,538
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 765 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 765 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 180 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv886702 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nsv886702 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nsv886702 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1532043 | copy number loss | MS10699 | SNP array | SNP genotyping analysis | 39 |
| nssv1537933 | copy number loss | MS13426 | SNP array | SNP genotyping analysis | 38 |
| nssv1566032 | copy number loss | IS30562 | SNP array | SNP genotyping analysis | 16 |
| nssv1566753 | copy number loss | IS30899 | SNP array | SNP genotyping analysis | 39 |
| nssv1567010 | copy number loss | IS31041 | SNP array | SNP genotyping analysis | 83 |
| nssv1569266 | copy number loss | IS31554 | SNP array | SNP genotyping analysis | 56 |
| nssv1569642 | copy number loss | IS31652 | SNP array | SNP genotyping analysis | 16 |
| nssv1570455 | copy number loss | IS32015 | SNP array | SNP genotyping analysis | 16 |
| nssv1582801 | copy number loss | IS36170 | SNP array | SNP genotyping analysis | 26 |
| nssv1582961 | copy number loss | IS36219 | SNP array | SNP genotyping analysis | 125 |
| nssv1583528 | copy number loss | IS36527 | SNP array | SNP genotyping analysis | 45 |
| nssv1591928 | copy number loss | IS39100 | SNP array | SNP genotyping analysis | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1532043 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1537933 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1566032 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1566753 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1567010 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1569266 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1569642 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1570455 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1582801 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1582961 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1583528 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1591928 | Remapped | Perfect | NC_000006.12:g.(14 0581682_140590252) _(140720192_140724 219)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 140,581,682 | 140,590,252 | 140,720,192 | 140,724,219 |
| nssv1532043 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1537933 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1566032 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1566753 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1567010 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1569266 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1569642 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1570455 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1582801 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1582961 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1583528 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1591928 | Remapped | Perfect | NC_000006.11:g.(14 0902819_140911389) _(141041329_141045 356)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 140,902,819 | 140,911,389 | 141,041,329 | 141,045,356 |
| nssv1532043 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1537933 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1566032 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1566753 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1567010 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1569266 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1569642 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1570455 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1582801 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1582961 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1583528 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 | ||
| nssv1591928 | Submitted genomic | NC_000006.10:g.(14 0944512_140953082) _(141083022_141087 049)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 140,944,512 | 140,953,082 | 141,083,022 | 141,087,049 |