nsv887272
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,162
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 301 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 301 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv887272 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 2,118,755 | 2,120,701 | 2,150,817 | 2,156,916 |
| nsv887272 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 2,158,390 | 2,160,336 | 2,190,452 | 2,196,551 |
| nsv887272 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 2,124,916 | 2,126,862 | 2,156,978 | 2,163,077 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1580844 | copy number loss | IS35484 | SNP array | SNP genotyping analysis | 201 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1580844 | Remapped | Perfect | NC_000007.14:g.(21 18755_2120701)_(21 50817_2156916)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 2,118,755 | 2,120,701 | 2,150,817 | 2,156,916 |
| nssv1580844 | Remapped | Perfect | NC_000007.13:g.(21 58390_2160336)_(21 90452_2196551)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 2,158,390 | 2,160,336 | 2,190,452 | 2,196,551 |
| nssv1580844 | Submitted genomic | NC_000007.12:g.(21 24916_2126862)_(21 56978_2163077)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 2,124,916 | 2,126,862 | 2,156,978 | 2,163,077 |