nsv887335
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66,468
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 429 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 429 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 156 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv887335 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nsv887335 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nsv887335 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1537819 | copy number loss | MS13379 | SNP array | SNP genotyping analysis | 13 |
| nssv1540347 | copy number loss | MS14809 | SNP array | SNP genotyping analysis | 18 |
| nssv1556259 | copy number loss | MS21868 | SNP array | SNP genotyping analysis | 44 |
| nssv1557363 | copy number loss | MS22639 | SNP array | SNP genotyping analysis | 11 |
| nssv1560118 | copy number loss | MS24330 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1537819 | Remapped | Perfect | NC_000007.14:g.(36 60720_3671119)_(37 14320_3727187)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nssv1540347 | Remapped | Perfect | NC_000007.14:g.(36 60720_3671119)_(37 14320_3727187)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nssv1556259 | Remapped | Perfect | NC_000007.14:g.(36 60720_3671119)_(37 14320_3727187)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nssv1557363 | Remapped | Perfect | NC_000007.14:g.(36 60720_3671119)_(37 14320_3727187)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nssv1560118 | Remapped | Perfect | NC_000007.14:g.(36 60720_3671119)_(37 14320_3727187)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 3,660,720 | 3,671,119 | 3,714,320 | 3,727,187 |
| nssv1537819 | Remapped | Perfect | NC_000007.13:g.(37 00352_3710751)_(37 53952_3766819)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nssv1540347 | Remapped | Perfect | NC_000007.13:g.(37 00352_3710751)_(37 53952_3766819)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nssv1556259 | Remapped | Perfect | NC_000007.13:g.(37 00352_3710751)_(37 53952_3766819)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nssv1557363 | Remapped | Perfect | NC_000007.13:g.(37 00352_3710751)_(37 53952_3766819)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nssv1560118 | Remapped | Perfect | NC_000007.13:g.(37 00352_3710751)_(37 53952_3766819)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 3,700,352 | 3,710,751 | 3,753,952 | 3,766,819 |
| nssv1537819 | Submitted genomic | NC_000007.12:g.(36 66878_3677277)_(37 20478_3733345)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 | ||
| nssv1540347 | Submitted genomic | NC_000007.12:g.(36 66878_3677277)_(37 20478_3733345)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 | ||
| nssv1556259 | Submitted genomic | NC_000007.12:g.(36 66878_3677277)_(37 20478_3733345)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 | ||
| nssv1557363 | Submitted genomic | NC_000007.12:g.(36 66878_3677277)_(37 20478_3733345)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 | ||
| nssv1560118 | Submitted genomic | NC_000007.12:g.(36 66878_3677277)_(37 20478_3733345)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 3,666,878 | 3,677,277 | 3,720,478 | 3,733,345 |