nsv887549
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:124,532
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 692 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 692 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 201 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv887549 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 9,729,584 | 9,736,118 | 9,849,658 | 9,854,115 |
| nsv887549 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 9,769,213 | 9,775,747 | 9,889,287 | 9,893,744 |
| nsv887549 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 9,735,738 | 9,742,272 | 9,855,812 | 9,860,269 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1534567 | copy number loss | MS11669 | SNP array | SNP genotyping analysis | 42 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1534567 | Remapped | Perfect | NC_000007.14:g.(97 29584_9736118)_(98 49658_9854115)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,729,584 | 9,736,118 | 9,849,658 | 9,854,115 |
| nssv1534567 | Remapped | Perfect | NC_000007.13:g.(97 69213_9775747)_(98 89287_9893744)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,769,213 | 9,775,747 | 9,889,287 | 9,893,744 |
| nssv1534567 | Submitted genomic | NC_000007.12:g.(97 35738_9742272)_(98 55812_9860269)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,735,738 | 9,742,272 | 9,855,812 | 9,860,269 |