nsv887558
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:61,733
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 377 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 132 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv887558 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nsv887558 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nsv887558 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535569 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
| nssv1537934 | copy number loss | MS13426 | SNP array | SNP genotyping analysis | 38 |
| nssv1567088 | copy number loss | IS31044 | SNP array | SNP genotyping analysis | 53 |
| nssv1569614 | copy number loss | IS31651 | SNP array | SNP genotyping analysis | 26 |
| nssv1588043 | copy number loss | IS38148 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535569 | Remapped | Perfect | NC_000007.14:g.(97 68836_9775957)_(98 23714_9830568)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nssv1537934 | Remapped | Perfect | NC_000007.14:g.(97 68836_9775957)_(98 23714_9830568)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nssv1567088 | Remapped | Perfect | NC_000007.14:g.(97 68836_9775957)_(98 23714_9830568)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nssv1569614 | Remapped | Perfect | NC_000007.14:g.(97 68836_9775957)_(98 23714_9830568)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nssv1588043 | Remapped | Perfect | NC_000007.14:g.(97 68836_9775957)_(98 23714_9830568)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 9,768,836 | 9,775,957 | 9,823,714 | 9,830,568 |
| nssv1535569 | Remapped | Perfect | NC_000007.13:g.(98 08465_9815586)_(98 63343_9870197)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nssv1537934 | Remapped | Perfect | NC_000007.13:g.(98 08465_9815586)_(98 63343_9870197)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nssv1567088 | Remapped | Perfect | NC_000007.13:g.(98 08465_9815586)_(98 63343_9870197)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nssv1569614 | Remapped | Perfect | NC_000007.13:g.(98 08465_9815586)_(98 63343_9870197)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nssv1588043 | Remapped | Perfect | NC_000007.13:g.(98 08465_9815586)_(98 63343_9870197)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 9,808,465 | 9,815,586 | 9,863,343 | 9,870,197 |
| nssv1535569 | Submitted genomic | NC_000007.12:g.(97 74990_9782111)_(98 29868_9836722)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 | ||
| nssv1537934 | Submitted genomic | NC_000007.12:g.(97 74990_9782111)_(98 29868_9836722)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 | ||
| nssv1567088 | Submitted genomic | NC_000007.12:g.(97 74990_9782111)_(98 29868_9836722)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 | ||
| nssv1569614 | Submitted genomic | NC_000007.12:g.(97 74990_9782111)_(98 29868_9836722)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 | ||
| nssv1588043 | Submitted genomic | NC_000007.12:g.(97 74990_9782111)_(98 29868_9836722)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 9,774,990 | 9,782,111 | 9,829,868 | 9,836,722 |