nsv887576

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:47,746

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 341 SVs from 57 studies. See in: genome view

Remapped(Score: Perfect):10,008,904-10,056,649

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv887576	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nsv887576	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nsv887576	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1520272	copy number loss	SP50775	SNP array	SNP genotyping analysis	11
nssv1521944	copy number loss	SP52651	SNP array	SNP genotyping analysis	11
nssv1523269	copy number loss	SP53876	SNP array	SNP genotyping analysis	13
nssv1523519	copy number loss	SP54063	SNP array	SNP genotyping analysis	12
nssv1526540	copy number loss	SP57642	SNP array	SNP genotyping analysis	10
nssv1527172	copy number loss	SP58209	SNP array	SNP genotyping analysis	14
nssv1528559	copy number loss	SP81266	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1520272	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1521944	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1523269	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1523519	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1526540	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1527172	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1528559	Remapped	Perfect	NC_000007.14:g.(10 008904_10022714)_( 10053853_10056649) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	10,008,904	10,022,714	10,053,853	10,056,649
nssv1520272	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1521944	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1523269	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1523519	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1526540	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1527172	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1528559	Remapped	Perfect	NC_000007.13:g.(10 048531_10062341)_( 10093480_10096276) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	10,048,531	10,062,341	10,093,480	10,096,276
nssv1520272	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1521944	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1523269	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1523519	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1526540	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1527172	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801
nssv1528559	Submitted genomic		NC_000007.12:g.(10 015056_10028866)_( 10060005_10062801) del	NCBI36 (hg18)		NC_000007.12	Chr7	10,015,056	10,028,866	10,060,005	10,062,801

dbVar

Database of genomic structural variation

nsv887576

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant