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dbVar

Database of genomic structural variation

nsv887677

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:78,535

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 409 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):13,349,043-13,427,577

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv887677	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	13,349,043	13,355,969	13,420,049	13,427,577
nsv887677	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	13,388,668	13,395,594	13,459,674	13,467,202
nsv887677	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	13,355,193	13,362,119	13,426,199	13,433,727

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1562822	copy number loss	MS25751	SNP array	SNP genotyping analysis	42
nssv1566392	copy number loss	IS30683	SNP array	SNP genotyping analysis	19
nssv1567855	copy number loss	IS31166	SNP array	SNP genotyping analysis	41
nssv1571243	copy number gain	IS32653	SNP array	SNP genotyping analysis	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1562822	Remapped	Perfect	NC_000007.14:g.(13 349043_13355969)_( 13420049_13427577) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	13,349,043	13,355,969	13,420,049	13,427,577
nssv1566392	Remapped	Perfect	NC_000007.14:g.(13 349043_13355969)_( 13420049_13427577) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	13,349,043	13,355,969	13,420,049	13,427,577
nssv1567855	Remapped	Perfect	NC_000007.14:g.(13 349043_13355969)_( 13420049_13427577) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	13,349,043	13,355,969	13,420,049	13,427,577
nssv1571243	Remapped	Perfect	NC_000007.14:g.(13 349043_13355969)_( 13420049_13427577) dup	GRCh38.p12	First Pass	NC_000007.14	Chr7	13,349,043	13,355,969	13,420,049	13,427,577
nssv1562822	Remapped	Perfect	NC_000007.13:g.(13 388668_13395594)_( 13459674_13467202) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	13,388,668	13,395,594	13,459,674	13,467,202
nssv1566392	Remapped	Perfect	NC_000007.13:g.(13 388668_13395594)_( 13459674_13467202) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	13,388,668	13,395,594	13,459,674	13,467,202
nssv1567855	Remapped	Perfect	NC_000007.13:g.(13 388668_13395594)_( 13459674_13467202) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	13,388,668	13,395,594	13,459,674	13,467,202
nssv1571243	Remapped	Perfect	NC_000007.13:g.(13 388668_13395594)_( 13459674_13467202) dup	GRCh37.p13	First Pass	NC_000007.13	Chr7	13,388,668	13,395,594	13,459,674	13,467,202
nssv1562822	Submitted genomic		NC_000007.12:g.(13 355193_13362119)_( 13426199_13433727) del	NCBI36 (hg18)		NC_000007.12	Chr7	13,355,193	13,362,119	13,426,199	13,433,727
nssv1566392	Submitted genomic		NC_000007.12:g.(13 355193_13362119)_( 13426199_13433727) del	NCBI36 (hg18)		NC_000007.12	Chr7	13,355,193	13,362,119	13,426,199	13,433,727
nssv1567855	Submitted genomic		NC_000007.12:g.(13 355193_13362119)_( 13426199_13433727) del	NCBI36 (hg18)		NC_000007.12	Chr7	13,355,193	13,362,119	13,426,199	13,433,727
nssv1571243	Submitted genomic		NC_000007.12:g.(13 355193_13362119)_( 13426199_13433727) dup	NCBI36 (hg18)		NC_000007.12	Chr7	13,355,193	13,362,119	13,426,199	13,433,727

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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