nsv888239
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:73,262
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 302 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 310 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 73 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv888239 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nsv888239 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nsv888239 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1520612 | copy number loss | SP51179 | SNP array | SNP genotyping analysis | 18 |
| nssv1520875 | copy number loss | SP51290 | SNP array | SNP genotyping analysis | 14 |
| nssv1522786 | copy number loss | SP53426 | SNP array | SNP genotyping analysis | 12 |
| nssv1525253 | copy number loss | SP56381 | SNP array | SNP genotyping analysis | 14 |
| nssv1525394 | copy number loss | SP56542 | SNP array | SNP genotyping analysis | 11 |
| nssv1531671 | copy number loss | MS10591 | SNP array | SNP genotyping analysis | 18 |
| nssv1532852 | copy number loss | MS10875 | SNP array | SNP genotyping analysis | 7 |
| nssv1534957 | copy number loss | MS11858 | SNP array | SNP genotyping analysis | 15 |
| nssv1538915 | copy number loss | MS13813 | SNP array | SNP genotyping analysis | 9 |
| nssv1545347 | copy number loss | MS16728 | SNP array | SNP genotyping analysis | 9 |
| nssv1545588 | copy number loss | MS16846 | SNP array | SNP genotyping analysis | 10 |
| nssv1549462 | copy number loss | MS18247 | SNP array | SNP genotyping analysis | 13 |
| nssv1550505 | copy number loss | MS18432 | SNP array | SNP genotyping analysis | 8 |
| nssv1550629 | copy number loss | MS18503 | SNP array | SNP genotyping analysis | 14 |
| nssv1554268 | copy number loss | MS20702 | SNP array | SNP genotyping analysis | 12 |
| nssv1557853 | copy number loss | MS22952 | SNP array | SNP genotyping analysis | 10 |
| nssv1558907 | copy number loss | MS23626 | SNP array | SNP genotyping analysis | 14 |
| nssv1560245 | copy number loss | MS24390 | SNP array | SNP genotyping analysis | 12 |
| nssv1560505 | copy number loss | MS24508 | SNP array | SNP genotyping analysis | 13 |
| nssv1562449 | copy number loss | MS25589 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1520612 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1520875 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1522786 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1525253 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1525394 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1531671 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1532852 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1534957 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1538915 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1545347 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1545588 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1549462 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1550505 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1550629 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1554268 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1557853 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1558907 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1560245 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1560505 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1562449 | Remapped | Perfect | NC_000007.14:g.(63 401698_63413075)_( 63465618_63474959) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 63,401,698 | 63,413,075 | 63,465,618 | 63,474,959 |
| nssv1520612 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1520875 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1522786 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1525253 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1525394 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1531671 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1532852 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1534957 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1538915 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1545347 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1545588 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1549462 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1550505 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1550629 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1554268 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1557853 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1558907 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1560245 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1560505 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1562449 | Remapped | Perfect | NC_000007.13:g.(62 862076_62873453)_( 62925996_62935337) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 62,862,076 | 62,873,453 | 62,925,996 | 62,935,337 |
| nssv1520612 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1520875 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1522786 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1525253 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1525394 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1531671 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1532852 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1534957 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1538915 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1545347 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1545588 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1549462 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1550505 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1550629 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1554268 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1557853 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1558907 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1560245 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1560505 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 | ||
| nssv1562449 | Submitted genomic | NC_000007.12:g.(62 499511_62510888)_( 62563431_62572772) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 62,499,511 | 62,510,888 | 62,563,431 | 62,572,772 |