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dbVar

Database of genomic structural variation

nsv888340

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:79,146

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 278 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):70,414,928-70,494,073

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv888340	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	70,414,928	70,422,099	70,487,201	70,494,073
nsv888340	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	69,879,914	69,887,085	69,952,187	69,959,059
nsv888340	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	69,517,850	69,525,021	69,590,123	69,596,995

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1552682	copy number loss	MS19584	SNP array	SNP genotyping analysis	22
nssv1555085	copy number loss	MS21189	SNP array	SNP genotyping analysis	22
nssv1556116	copy number loss	MS21814	SNP array	SNP genotyping analysis	17
nssv1556260	copy number loss	MS21868	SNP array	SNP genotyping analysis	44

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1552682	Remapped	Perfect	NC_000007.14:g.(70 414928_70422099)_( 70487201_70494073) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	70,414,928	70,422,099	70,487,201	70,494,073
nssv1555085	Remapped	Perfect	NC_000007.14:g.(70 414928_70422099)_( 70487201_70494073) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	70,414,928	70,422,099	70,487,201	70,494,073
nssv1556116	Remapped	Perfect	NC_000007.14:g.(70 414928_70422099)_( 70487201_70494073) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	70,414,928	70,422,099	70,487,201	70,494,073
nssv1556260	Remapped	Perfect	NC_000007.14:g.(70 414928_70422099)_( 70487201_70494073) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	70,414,928	70,422,099	70,487,201	70,494,073
nssv1552682	Remapped	Perfect	NC_000007.13:g.(69 879914_69887085)_( 69952187_69959059) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	69,879,914	69,887,085	69,952,187	69,959,059
nssv1555085	Remapped	Perfect	NC_000007.13:g.(69 879914_69887085)_( 69952187_69959059) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	69,879,914	69,887,085	69,952,187	69,959,059
nssv1556116	Remapped	Perfect	NC_000007.13:g.(69 879914_69887085)_( 69952187_69959059) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	69,879,914	69,887,085	69,952,187	69,959,059
nssv1556260	Remapped	Perfect	NC_000007.13:g.(69 879914_69887085)_( 69952187_69959059) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	69,879,914	69,887,085	69,952,187	69,959,059
nssv1552682	Submitted genomic		NC_000007.12:g.(69 517850_69525021)_( 69590123_69596995) del	NCBI36 (hg18)		NC_000007.12	Chr7	69,517,850	69,525,021	69,590,123	69,596,995
nssv1555085	Submitted genomic		NC_000007.12:g.(69 517850_69525021)_( 69590123_69596995) del	NCBI36 (hg18)		NC_000007.12	Chr7	69,517,850	69,525,021	69,590,123	69,596,995
nssv1556116	Submitted genomic		NC_000007.12:g.(69 517850_69525021)_( 69590123_69596995) del	NCBI36 (hg18)		NC_000007.12	Chr7	69,517,850	69,525,021	69,590,123	69,596,995
nssv1556260	Submitted genomic		NC_000007.12:g.(69 517850_69525021)_( 69590123_69596995) del	NCBI36 (hg18)		NC_000007.12	Chr7	69,517,850	69,525,021	69,590,123	69,596,995

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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