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dbVar

Database of genomic structural variation

nsv888640

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:165,884

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 606 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):84,539,299-84,705,182

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv888640	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	84,539,299	84,556,843	84,698,761	84,705,182
nsv888640	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	84,168,615	84,186,159	84,328,077	84,334,498
nsv888640	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	84,006,551	84,024,095	84,166,013	84,172,434

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1534568	copy number loss	MS11669	SNP array	SNP genotyping analysis	42
nssv1535572	copy number loss	MS12266	SNP array	SNP genotyping analysis	58

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1534568	Remapped	Perfect	NC_000007.14:g.(84 539299_84556843)_( 84698761_84705182) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	84,539,299	84,556,843	84,698,761	84,705,182
nssv1535572	Remapped	Perfect	NC_000007.14:g.(84 539299_84556843)_( 84698761_84705182) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	84,539,299	84,556,843	84,698,761	84,705,182
nssv1534568	Remapped	Perfect	NC_000007.13:g.(84 168615_84186159)_( 84328077_84334498) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	84,168,615	84,186,159	84,328,077	84,334,498
nssv1535572	Remapped	Perfect	NC_000007.13:g.(84 168615_84186159)_( 84328077_84334498) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	84,168,615	84,186,159	84,328,077	84,334,498
nssv1534568	Submitted genomic		NC_000007.12:g.(84 006551_84024095)_( 84166013_84172434) del	NCBI36 (hg18)		NC_000007.12	Chr7	84,006,551	84,024,095	84,166,013	84,172,434
nssv1535572	Submitted genomic		NC_000007.12:g.(84 006551_84024095)_( 84166013_84172434) del	NCBI36 (hg18)		NC_000007.12	Chr7	84,006,551	84,024,095	84,166,013	84,172,434

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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