nsv888893
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:39,041
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 423 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 423 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 218 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv888893 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nsv888893 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nsv888893 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1504320 | copy number loss | SP52431 | SNP array | SNP genotyping analysis | 12 |
| nssv1509902 | copy number loss | SP54956 | SNP array | SNP genotyping analysis | 783 |
| nssv1544123 | copy number loss | MS16266 | SNP array | SNP genotyping analysis | 9 |
| nssv1546034 | copy number loss | MS17113 | SNP array | SNP genotyping analysis | 12 |
| nssv1552665 | copy number loss | MS19582 | SNP array | SNP genotyping analysis | 12 |
| nssv1558593 | copy number loss | MS23412 | SNP array | SNP genotyping analysis | 11 |
| nssv1567537 | copy number loss | IS31113 | SNP array | SNP genotyping analysis | 7 |
| nssv1574763 | copy number gain | IS33622 | SNP array | SNP genotyping analysis | 12 |
| nssv1579057 | copy number loss | IS35010 | SNP array | SNP genotyping analysis | 9 |
| nssv1582061 | copy number loss | IS35783 | SNP array | SNP genotyping analysis | 8 |
| nssv1591586 | copy number loss | IS38994 | SNP array | SNP genotyping analysis | 6 |
| nssv1598390 | copy number gain | IS41166 | SNP array | SNP genotyping analysis | 14 |
| nssv1600159 | copy number loss | IS41852 | SNP array | SNP genotyping analysis | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1504320 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1509902 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1544123 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1546034 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1552665 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1558593 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1567537 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1574763 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1579057 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1582061 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1591586 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1598390 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1600159 | Remapped | Good | NC_000007.14:g.(10 2595402_102595402) _(102634442_102634 442)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 102,595,402 | 102,595,402 | 102,634,442 | 102,634,442 |
| nssv1504320 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1509902 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1544123 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1546034 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1552665 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1558593 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1567537 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1574763 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1579057 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1582061 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1591586 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1598390 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1600159 | Remapped | Good | NC_000007.13:g.(10 2235849_102235849) _(102274889_102274 889)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 102,235,849 | 102,235,849 | 102,274,889 | 102,274,889 |
| nssv1504320 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1509902 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1544123 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1546034 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1552665 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1558593 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1567537 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1574763 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1579057 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1582061 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1591586 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1598390 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 | ||
| nssv1600159 | Submitted genomic | NC_000007.12:g.(10 2022918_102032517) _(102052702_102062 128)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 102,022,918 | 102,032,517 | 102,052,702 | 102,062,128 |