nsv889087
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19,550
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 191 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 191 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 38 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889087 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nsv889087 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nsv889087 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1535573 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
| nssv1565716 | copy number loss | IS30508 | SNP array | SNP genotyping analysis | 11 |
| nssv1567394 | copy number loss | IS31074 | SNP array | SNP genotyping analysis | 39 |
| nssv1579634 | copy number loss | IS35145 | SNP array | SNP genotyping analysis | 56 |
| nssv1581844 | copy number loss | IS35742 | SNP array | SNP genotyping analysis | 62 |
| nssv1582356 | copy number loss | IS35911 | SNP array | SNP genotyping analysis | 89 |
| nssv1582965 | copy number loss | IS36219 | SNP array | SNP genotyping analysis | 125 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1535573 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1565716 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1567394 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1579634 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1581844 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1582356 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1582965 | Remapped | Perfect | NC_000007.14:g.(11 7586712_117589113) _(117601340_117606 261)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 117,586,712 | 117,589,113 | 117,601,340 | 117,606,261 |
| nssv1535573 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1565716 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1567394 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1579634 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1581844 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1582356 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1582965 | Remapped | Perfect | NC_000007.13:g.(11 7226766_117229167) _(117241394_117246 315)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 117,226,766 | 117,229,167 | 117,241,394 | 117,246,315 |
| nssv1535573 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1565716 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1567394 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1579634 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1581844 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1582356 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 | ||
| nssv1582965 | Submitted genomic | NC_000007.12:g.(11 7014002_117016403) _(117028630_117033 551)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 117,014,002 | 117,016,403 | 117,028,630 | 117,033,551 |