nsv889150
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:484,602
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1849 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1849 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 519 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889150 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 125,591,980 | 125,594,121 | 126,072,683 | 126,076,581 |
| nsv889150 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 125,232,034 | 125,234,175 | 125,712,737 | 125,716,635 |
| nsv889150 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 125,019,270 | 125,021,411 | 125,499,973 | 125,503,871 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1523816 | copy number loss | SP54220 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1523816 | Remapped | Perfect | NC_000007.14:g.(12 5591980_125594121) _(126072683_126076 581)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 125,591,980 | 125,594,121 | 126,072,683 | 126,076,581 |
| nssv1523816 | Remapped | Perfect | NC_000007.13:g.(12 5232034_125234175) _(125712737_125716 635)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 125,232,034 | 125,234,175 | 125,712,737 | 125,716,635 |
| nssv1523816 | Submitted genomic | NC_000007.12:g.(12 5019270_125021411) _(125499973_125503 871)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 125,019,270 | 125,021,411 | 125,499,973 | 125,503,871 |