nsv889382
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:93,363
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 413 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 413 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 169 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889382 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 145,589,440 | 145,601,253 | 145,670,452 | 145,682,802 |
| nsv889382 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 145,286,533 | 145,298,346 | 145,367,545 | 145,379,895 |
| nsv889382 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 144,917,466 | 144,929,279 | 144,998,478 | 145,010,828 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1584572 | copy number loss | IS37065 | SNP array | SNP genotyping analysis | 45 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1584572 | Remapped | Perfect | NC_000007.14:g.(14 5589440_145601253) _(145670452_145682 802)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 145,589,440 | 145,601,253 | 145,670,452 | 145,682,802 |
| nssv1584572 | Remapped | Perfect | NC_000007.13:g.(14 5286533_145298346) _(145367545_145379 895)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 145,286,533 | 145,298,346 | 145,367,545 | 145,379,895 |
| nssv1584572 | Submitted genomic | NC_000007.12:g.(14 4917466_144929279) _(144998478_145010 828)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 144,917,466 | 144,929,279 | 144,998,478 | 145,010,828 |