nsv889598
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:78,275
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 737 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 737 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 221 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889598 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 157,747,726 | 157,750,646 | 157,813,123 | 157,826,000 |
| nsv889598 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187563.1 | Chr7|NT_18 7563.1 | 53,492 | 53,492 | 126,434 | - |
| nsv889598 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 157,540,418 | 157,543,338 | 157,605,815 | 157,618,692 |
| nsv889598 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 157,233,179 | 157,236,099 | 157,298,576 | 157,311,453 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1580852 | copy number loss | IS35484 | SNP array | SNP genotyping analysis | 201 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1580852 | Remapped | Pass | NT_187563.1:g.(534 92_53492)_(126434_ ?)del | GRCh38.p12 | Second Pass | NT_187563.1 | Chr7|NT_18 7563.1 | 53,492 | 53,492 | 126,434 | - |
| nssv1580852 | Remapped | Perfect | NC_000007.14:g.(15 7747726_157750646) _(157813123_157826 000)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 157,747,726 | 157,750,646 | 157,813,123 | 157,826,000 |
| nssv1580852 | Remapped | Perfect | NC_000007.13:g.(15 7540418_157543338) _(157605815_157618 692)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 157,540,418 | 157,543,338 | 157,605,815 | 157,618,692 |
| nssv1580852 | Submitted genomic | NC_000007.12:g.(15 7233179_157236099) _(157298576_157311 453)del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 157,233,179 | 157,236,099 | 157,298,576 | 157,311,453 |