nsv889644
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:413,757
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2814 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 2814 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 882 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889644 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 158,533,395 | 158,533,395 | 158,947,151 | 158,947,151 |
| nsv889644 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 158,326,087 | 158,344,459 | 158,730,579 | 158,739,842 |
| nsv889644 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 158,018,848 | 158,037,220 | 158,423,340 | 158,432,603 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1547409 | copy number gain | MS17371 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1547409 | Remapped | Perfect | NC_000007.14:g.(15 8533395_158533395) _(158947151_158947 151)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 158,533,395 | 158,533,395 | 158,947,151 | 158,947,151 |
| nssv1547409 | Remapped | Perfect | NC_000007.13:g.(15 8326087_158344459) _(158730579_158739 842)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 158,326,087 | 158,344,459 | 158,730,579 | 158,739,842 |
| nssv1547409 | Submitted genomic | NC_000007.12:g.(15 8018848_158037220) _(158423340_158432 603)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 158,018,848 | 158,037,220 | 158,423,340 | 158,432,603 |