nsv889765
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20,970
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 907 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 486 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 752 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 457 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 380 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv889765 | Remapped | Good | GRCh38.p12 | Primary Assembly | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nsv889765 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nsv889765 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nsv889765 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nsv889765 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1531455 | copy number loss | MS10445 | SNP array | SNP genotyping analysis | 11 |
| nssv1534919 | copy number loss | MS11821 | SNP array | SNP genotyping analysis | 11 |
| nssv1539082 | copy number loss | MS14111 | SNP array | SNP genotyping analysis | 9 |
| nssv1539784 | copy number loss | MS14500 | SNP array | SNP genotyping analysis | 14 |
| nssv1541316 | copy number loss | MS15242 | SNP array | SNP genotyping analysis | 13 |
| nssv1552336 | copy number loss | MS19345 | SNP array | SNP genotyping analysis | 8 |
| nssv1559258 | copy number loss | MS23798 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1531455 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1534919 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1539082 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1539784 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1541316 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1552336 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1559258 | Remapped | Perfect | NT_187576.1:g.(358 319_358904)_(37732 1_378628)del | GRCh38.p12 | First Pass | NT_187576.1 | Chr8|NT_18 7576.1 | 358,319 | 358,904 | 377,321 | 378,628 |
| nssv1531455 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1534919 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1539082 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1539784 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1541316 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1552336 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1559258 | Remapped | Good | NC_000008.11:g.(21 74918_2174918)_(21 95887_2195887)del | GRCh38.p12 | Second Pass | NC_000008.11 | Chr8 | 2,174,918 | 2,174,918 | 2,195,887 | 2,195,887 |
| nssv1531455 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1534919 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1539082 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1539784 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1541316 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1552336 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1559258 | Remapped | Perfect | NW_003571042.1:g.( 157720_158305)_(17 6722_178029)del | GRCh37.p13 | First Pass | NW_003571042.1 | Chr8|NW_00 3571042.1 | 157,720 | 158,305 | 176,722 | 178,029 |
| nssv1531455 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1534919 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1539082 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1539784 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1541316 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1552336 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1559258 | Remapped | Perfect | NC_000008.10:g.(21 23109_2123694)_(21 42111_2143418)del | GRCh37.p13 | Second Pass | NC_000008.10 | Chr8 | 2,123,109 | 2,123,694 | 2,142,111 | 2,143,418 |
| nssv1531455 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1534919 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1539082 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1539784 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1541316 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1552336 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 | ||
| nssv1559258 | Submitted genomic | NC_000008.9:g.(211 0516_2111101)_(212 9518_2130825)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 2,110,516 | 2,111,101 | 2,129,518 | 2,130,825 |