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dbVar

Database of genomic structural variation

nsv889926

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:127,635

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1251 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):4,054,877-4,182,511

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv889926	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	4,054,877	4,060,596	4,175,664	4,182,511
nsv889926	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	3,912,399	3,918,118	4,033,186	4,040,033
nsv889926	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	3,899,807	3,905,526	4,020,594	4,027,441

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1525811	copy number loss	SP56830	SNP array	SNP genotyping analysis	13
nssv1529814	copy number loss	MS10123	SNP array	SNP genotyping analysis	152

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1525811	Remapped	Perfect	NC_000008.11:g.(40 54877_4060596)_(41 75664_4182511)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	4,054,877	4,060,596	4,175,664	4,182,511
nssv1529814	Remapped	Perfect	NC_000008.11:g.(40 54877_4060596)_(41 75664_4182511)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	4,054,877	4,060,596	4,175,664	4,182,511
nssv1525811	Remapped	Perfect	NC_000008.10:g.(39 12399_3918118)_(40 33186_4040033)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	3,912,399	3,918,118	4,033,186	4,040,033
nssv1529814	Remapped	Perfect	NC_000008.10:g.(39 12399_3918118)_(40 33186_4040033)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	3,912,399	3,918,118	4,033,186	4,040,033
nssv1525811	Submitted genomic		NC_000008.9:g.(389 9807_3905526)_(402 0594_4027441)del	NCBI36 (hg18)		NC_000008.9	Chr8	3,899,807	3,905,526	4,020,594	4,027,441
nssv1529814	Submitted genomic		NC_000008.9:g.(389 9807_3905526)_(402 0594_4027441)del	NCBI36 (hg18)		NC_000008.9	Chr8	3,899,807	3,905,526	4,020,594	4,027,441

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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